Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0710
(428 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012... 41 5e-04
02_04_0592 - 24171698-24172285 34 0.042
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 31 0.30
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673... 28 3.7
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209... 28 3.7
02_05_0212 - 26808484-26809368 28 3.7
12_02_0738 + 22669557-22669756,22669868-22669916,22670620-226706... 27 8.5
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 27 8.5
>08_02_0805 +
21400345-21400701,21400797-21400975,21401223-21401271,
21401310-21401390,21401988-21402605
Length = 427
Score = 40.7 bits (91), Expect = 5e-04
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +1
Query: 106 LKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKN 249
+K V N +L Y G WYEI+ FP+ + ++G + A Y L GD VKV N
Sbjct: 1 MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLN 50
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 261 DGVKKYIEGTAKLTDDANKAAKLTVTF 341
DG + +IEGTA D + AKL V F
Sbjct: 55 DGRRGHIEGTAYRADPVSDEAKLKVKF 81
>02_04_0592 - 24171698-24172285
Length = 195
Score = 34.3 bits (75), Expect = 0.042
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +1
Query: 103 ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKL--EGDVVKVKN-VQSSTAS 270
E+ V ++ Y G WYEI+ PN + ++G+ + A Y L +G V V N +S+
Sbjct: 13 EMTVVRGLDVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDVLNETWTSSGK 72
Query: 271 RSI*KG 288
R KG
Sbjct: 73 RDYIKG 78
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 264 GVKKYIEGTAKLTDDANKAAKLTVTF 341
G + YI+GTA D A+ AKL V F
Sbjct: 71 GKRDYIKGTAYKADPASDEAKLKVKF 96
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 31.5 bits (68), Expect = 0.30
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 115 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGD 231
V NFN+ + G WY IS N + C E+++EGD
Sbjct: 202 VKNFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239
>11_06_0684 -
26264540-26264661,26264926-26264989,26267168-26267371,
26268322-26268456,26269174-26269492,26269581-26269631,
26269721-26269864,26270080-26270160,26270252-26270302,
26270392-26270535,26270750-26270833,26270912-26271055,
26271147-26271196
Length = 530
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 137 LTKASGMKSRNFPTNLRRTANALQLNTNWKVTW*RSRTCNHR 262
+ K G +SRN+ N+R +AL +++ W R N R
Sbjct: 340 MCKEKGKRSRNYMDNIRFIVDALACIIQYRLDWIRKHQGNLR 381
>11_06_0275 -
21818071-21818192,21818457-21818520,21820699-21820902,
21821852-21821986,21822704-21823022,21823111-21823161,
21823251-21823394,21823610-21823690,21823782-21823832,
21823922-21824065,21824280-21824363,21824442-21824585,
21824677-21824726
Length = 530
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 137 LTKASGMKSRNFPTNLRRTANALQLNTNWKVTW*RSRTCNHR 262
+ K G +SRN+ N+R +AL +++ W R N R
Sbjct: 340 MCKEKGKRSRNYMDNIRFIVDALACIIQYRLDWIRKHQGNLR 381
>02_05_0212 - 26808484-26809368
Length = 294
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 226 GDVVKVKNVQSSTASRSI*KGRPSSPTTPIKPQ 324
GD KNV SS++S S K SS +P KP+
Sbjct: 44 GDAHNHKNVSSSSSSSSKAKPAASSKVSPAKPR 76
>12_02_0738 +
22669557-22669756,22669868-22669916,22670620-22670657,
22670977-22671058,22671146-22671195,22671381-22671847,
22671992-22672155,22672242-22672448,22672554-22672710,
22672858-22672965,22673161-22673234,22673364-22673521,
22673728-22673788,22673858-22673965
Length = 640
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +3
Query: 282 EGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAI 410
EG +TD K+ + G+ S DG V +NN+ +
Sbjct: 179 EGDNMITDGPLSKVKVEIVVLRGDFSNDGRVSWTEEQFNNHIV 221
>03_05_0816 +
27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 237 EGQERAIIDGVKKYIEGTAKLTDDANKAAK 326
EGQ R+I+DG+K+ I +A + AK
Sbjct: 743 EGQVRSIVDGIKEVITASALRRRERTDRAK 772
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,805,224
Number of Sequences: 37544
Number of extensions: 176256
Number of successful extensions: 510
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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