Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0710
         (428 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)                  36   0.019
SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.31 
SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)                    28   2.9  
SB_13634| Best HMM Match : efhand (HMM E-Value=2e-24)                  27   6.6  
SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5)                      27   6.6  
SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)                  27   8.7  

>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
          Length = 418

 Score = 35.5 bits (78), Expect = 0.019
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 91  GTCPELKPVNNFNLTAYQGIWYEI-SKFPNES--EKNGKCSSAEYKLEGD 231
           G C  +  V   N+T+Y G WY++ S F  E   E+N  C +A+Y L  D
Sbjct: 233 GPCQGIDTVPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLRKD 282


>SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +1

Query: 181 SEKNGKCSSAEYKLEGDVVKVKNVQSSTASRSI*KGRPSSPTTPIKPQS*QSLLSLEKYH 360
           S+ +GK  S   +LE  +V++K  Q++ A++ +            K  S QSL + +   
Sbjct: 529 SDSDGKAKSRIKELEAKIVELKKKQANAANKRLKDALQKQREAADKRMSQQSLQNKQSEG 588

Query: 361 AMDQFKSW 384
            + + KSW
Sbjct: 589 MLRRMKSW 596


>SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)
          Length = 591

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 235 PRHLPVCIQLKSICRSSQIRWEISRFHTRCLGKLSS*SCSPVSARGRCLRE*LQQSP 65
           PR+   C++L + C SSQ + ++   H + L +L+       S+R       LQ  P
Sbjct: 320 PRYHIACLKLWTSCYSSQFKQDLLAKHAKLLLRLAEKDSLDTSSRPAFCTASLQHQP 376


>SB_13634| Best HMM Match : efhand (HMM E-Value=2e-24)
          Length = 176

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 270 KKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSV 374
           K++IEG ++ +   +K +KL   F+  ++  DG +
Sbjct: 94  KEFIEGVSQFSVKGDKESKLKFAFRIYDMDNDGYI 128


>SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5)
          Length = 289

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +2

Query: 161 SRNFPTNLRRTANALQLNTNWKVTW*RSRTCNHRRRQEVYRRDGQAHRRRQ*SRKANSH 337
           SR+F  + +   N +    + K    R+ + N  RR + YR     +     SRK+ SH
Sbjct: 57  SRHFNKHEKGDQNPMATELDEKAISSRTTSANRTRRPDSYRSKNSENTDSHRSRKSESH 115


>SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1157

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 109 KPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEG 228
           K V N +L    G WYEI+ +      NG  ++    + G
Sbjct: 78  KAVENLHLDISSGNWYEITIYTGVWRNNGTTANVAATISG 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,098,797
Number of Sequences: 59808
Number of extensions: 203501
Number of successful extensions: 676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)