Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0710
(428 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 29 1.4
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 29 1.4
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 29 1.4
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 29 1.4
U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical pr... 28 2.5
Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical pr... 27 7.5
AF016662-10|AAB66055.1| 153|Caenorhabditis elegans Hypothetical... 27 7.5
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 27 7.5
Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical pr... 26 10.0
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 91 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 225
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 91 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 225
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 91 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 225
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 91 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 225
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical
protein C18H9.3 protein.
Length = 918
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 148 IWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVQSSTASRSI*KGRPSSPTTPIKP 321
+W++ F +ES + + + EYK GD+ K+ SST + P P P P
Sbjct: 399 VWFKAGYFTDESLRVQRGENGEYKTIGDLKKLHG--SSTPFEYLEDIEPPRPILPSIP 454
>Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 257 HRRRQEVYRRDGQAHRRRQ 313
HRRR E +RR + H RRQ
Sbjct: 711 HRRRLEEHRRREEEHHRRQ 729
>Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 257 HRRRQEVYRRDGQAHRRRQ 313
HRRR E +RR + H RRQ
Sbjct: 711 HRRRLEEHRRREEEHHRRQ 729
>AF016662-10|AAB66055.1| 153|Caenorhabditis elegans Hypothetical
protein C33C12.1 protein.
Length = 153
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 283 KGRPSSPTTPIKPQS*QSLLSLEKYHAMDQFKSWRLTIIT 402
+ RP SP+ +KP+ + L+L A D +KS L ++T
Sbjct: 81 ENRPKSPSVSLKPKRPEDFLTL----ASDDYKSEILPVLT 116
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 258 IDGVKKYIEGTAKLTDDANKAAKLTVTFKFGE 353
+DG+ +E TAK+T D + L VTF+ G+
Sbjct: 16 VDGIN--VECTAKVTSDGVERRSLRVTFENGD 45
>Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical
protein C33G3.6 protein.
Length = 624
Score = 26.2 bits (55), Expect = 10.0
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 175 NESEKNGKCSSAEYKLEGDVVKVKNVQSSTASRSI*KGRPSSPTT 309
++SE NGKCS E + E ++++K S + +P+S T
Sbjct: 170 HDSESNGKCSEEEDEDESYLIQLKYFGGSGKPLEQGQEKPTSAET 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,280,177
Number of Sequences: 27780
Number of extensions: 149155
Number of successful extensions: 514
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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