Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0710
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58070.1 68418.m07267 lipocalin, putative similar to temperat...    40   5e-04
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu...    29   1.0  
At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s...    28   2.3  
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila...    28   2.3  
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative...    28   3.1  
At1g59560.1 68414.m06698 expressed protein contains similarity t...    28   3.1  
At3g05150.1 68416.m00559 sugar transporter family protein simila...    27   4.1  
At1g28330.3 68414.m03480 dormancy-associated protein, putative (...    27   5.4  
At1g28330.2 68414.m03479 dormancy-associated protein, putative (...    27   5.4  
At1g28330.1 68414.m03478 dormancy-associated protein, putative (...    27   5.4  
At5g49110.1 68418.m06079 expressed protein  ; expression support...    27   7.1  
At5g37100.1 68418.m04453 replication protein-related weak simila...    27   7.1  
At2g14800.1 68415.m01677 hypothetical protein                          26   9.4  
At1g11200.1 68414.m01283 expressed protein contains Pfam profile...    26   9.4  

>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
           stress-induced lipocalin [Triticum aestivum] GI:18650668
          Length = 186

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 103 ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVQSSTASRS 276
           E++ V   N+  Y G WYEI+ FP+  + KNG  + A Y L  D  + V N   S   R 
Sbjct: 6   EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRG 65

Query: 277 I*KG 288
             +G
Sbjct: 66  FIEG 69


>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
           putative (AVDE1) similar to EST gb|N37612
          Length = 462

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 115 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNV 252
           V NFN++ + G WY I+   N +     C   E+  EGD   V N+
Sbjct: 204 VQNFNISDFNGKWY-ITSGLNPTFDAFDCQLHEFHTEGDNKLVGNI 248


>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
           similar to SP|P04051 DNA-directed RNA polymerase III
           largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
           contains InterPro accession IPR000722: RNA polymerase,
           alpha subunit
          Length = 1328

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 276 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIA 413
           Y   +  ++    KA      F  G  ++DG   +L  DYN++A A
Sbjct: 609 YFRNSELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAA 654


>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
           to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
          Length = 1280

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +1

Query: 190 NGKCSSAEYKLEGDVVKVKNVQ---SSTASRSI 279
           N K SSAEY  + +VVK  NV+   SST S S+
Sbjct: 234 NRKSSSAEYSSQKEVVKKTNVEGPKSSTPSNSM 266


>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 345

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +1

Query: 160 ISKFPNESEKNGKCSSAEYKLEG--DVVKVKNVQ-SSTASRSI*KGRPSSPTTPI 315
           +S FP ES+ + K ++ E+KL G  + V VKN+  S      I  G+P   T  +
Sbjct: 14  VSGFPKESDFDFKTTTVEFKLPGGSNSVLVKNLYLSCDPYMRIRMGKPDPSTAAL 68


>At1g59560.1 68414.m06698 expressed protein contains similarity to
           apoptosis inhibitors
          Length = 338

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 182 LRRTANALQLNTNWKVTW*RSRTCNHRRRQEV--YRRDG 292
           L+RTA    L  NW+ +W R+ T      +EV  Y  DG
Sbjct: 78  LKRTAEQQVLRRNWRFSWVRNSTLMQPMTKEVPWYLDDG 116


>At3g05150.1 68416.m00559 sugar transporter family protein similar
           to sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 470

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 161 SRNFPTNLRRTANALQLNTNWKVTW*RSRTCN 256
           S  FP NL+ TA  L    NW  +W  S T N
Sbjct: 394 SEIFPINLKGTAGGLVTVVNWLSSWLVSFTFN 425


>At1g28330.3 68414.m03480 dormancy-associated protein, putative
           (DRM1) identical to dormancy-associated protein
           [Arabidopsis thaliana] GI:2995990; similar to
           dormancy-associated protein GI:2605887 from [Pisum
           sativum]; contains Pfam profile PF05564: Dormancy/auxin
           associated protein
          Length = 132

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 223 EGDVVKVKNVQSSTASRSI*KGRPSSPTTPIKPQ 324
           EG   KV   +S T   ++  G P++PTTP  P+
Sbjct: 39  EGSSSKVVMHRSLTMPAAVSPGTPTTPTTPTTPR 72


>At1g28330.2 68414.m03479 dormancy-associated protein, putative
           (DRM1) identical to dormancy-associated protein
           [Arabidopsis thaliana] GI:2995990; similar to
           dormancy-associated protein GI:2605887 from [Pisum
           sativum]; contains Pfam profile PF05564: Dormancy/auxin
           associated protein
          Length = 132

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 223 EGDVVKVKNVQSSTASRSI*KGRPSSPTTPIKPQ 324
           EG   KV   +S T   ++  G P++PTTP  P+
Sbjct: 39  EGSSSKVVMHRSLTMPAAVSPGTPTTPTTPTTPR 72


>At1g28330.1 68414.m03478 dormancy-associated protein, putative
           (DRM1) identical to dormancy-associated protein
           [Arabidopsis thaliana] GI:2995990; similar to
           dormancy-associated protein GI:2605887 from [Pisum
           sativum]; contains Pfam profile PF05564: Dormancy/auxin
           associated protein
          Length = 122

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 223 EGDVVKVKNVQSSTASRSI*KGRPSSPTTPIKPQ 324
           EG   KV   +S T   ++  G P++PTTP  P+
Sbjct: 39  EGSSSKVVMHRSLTMPAAVSPGTPTTPTTPTTPR 72


>At5g49110.1 68418.m06079 expressed protein  ; expression supported
           by MPSS
          Length = 1487

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 342 KFGEISRDGSVQVLATDYNNYAIAYNCKY 428
           KFGE S       L T YN+Y ++ +CK+
Sbjct: 321 KFGESSLGMLRTALLTAYNDYRLSKDCKW 349


>At5g37100.1 68418.m04453 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 269

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 115 VNNFNLTAYQGIWYEISKFP-NESEKNGKCSSAEYKLE 225
           +NNF  + ++G WY I+ F    +    K SS  Y++E
Sbjct: 60  LNNFKPSLFEGKWYYIADFRLKRATSIPKYSSFNYEIE 97


>At2g14800.1 68415.m01677 hypothetical protein
          Length = 580

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 143 KASGMKSRNFPTNLRRTANALQLNTNWKVTW*RSRTC 253
           K  G+KS  F  N  +     + N  W  TW R  TC
Sbjct: 175 KLKGLKSWMFKYNFEKRILEKRHNRGWLHTWSRRVTC 211


>At1g11200.1 68414.m01283 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 295

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -1

Query: 317 FIGVVGELG-RPFYILLDAVDDC 252
           F+G++   G +PF++ LDAV +C
Sbjct: 63  FVGLLDAKGSKPFFMFLDAVKEC 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,867,614
Number of Sequences: 28952
Number of extensions: 140446
Number of successful extensions: 368
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)