Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0707
         (429 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3GHF4 Cluster: Predicted protein; n=2; Saccharomycetac...    34   1.4  
UniRef50_Q39JT6 Cluster: Ribonucleoside-diphosphate reductase; n...    31   7.7  

>UniRef50_A3GHF4 Cluster: Predicted protein; n=2;
           Saccharomycetaceae|Rep: Predicted protein - Pichia
           stipitis (Yeast)
          Length = 804

 Score = 33.9 bits (74), Expect = 1.4
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
 Frame = +3

Query: 138 IWSYTKKKSEILL---FVNKRSKQS*KNDL*VF---FFKVSLNSRFFHNSWGIFNILNCH 299
           +W   K   EILL    ++K S++  +ND+ V      KV ++    +N   I NI+  H
Sbjct: 246 LWITAKTIPEILLTKNIIDKISEERFRNDIIVKEIELTKVKIDLMTLYNQSEILNIMFKH 305

Query: 300 GVFILIISPALCIHCVIEYQMCLLDGM 380
           G+FI + S     +C I  Q C L+ +
Sbjct: 306 GIFIQMPSLGEKNNCKILIQGCSLEAV 332


>UniRef50_Q39JT6 Cluster: Ribonucleoside-diphosphate reductase;
           n=86; Bacteria|Rep: Ribonucleoside-diphosphate reductase
           - Burkholderia sp. (strain 383) (Burkholderia cepacia
           (strain ATCC 17760/ NCIB 9086 / R18194))
          Length = 998

 Score = 31.5 bits (68), Expect = 7.7
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 100 SNFNFPSSTKTLAFGVTRKKKVKSCYLST 186
           S+F+F SST TL    T + ++ SCYL+T
Sbjct: 352 SSFDFMSSTPTLFNSGTHRSQLSSCYLTT 380


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 388,707,435
Number of Sequences: 1657284
Number of extensions: 6865958
Number of successful extensions: 12933
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12932
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20653970351
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)