Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0707
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0458 + 3536162-3537794,3537905-3538272                           29   1.2  
06_03_0449 + 20907491-20910146,20910313-20910782                       27   4.9  
01_06_1417 - 37189068-37190321                                         27   6.4  
05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157     27   8.5  
03_06_0513 - 34432798-34433043,34433272-34433436,34433557-344338...    27   8.5  

>11_01_0458 + 3536162-3537794,3537905-3538272
          Length = 666

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 21/53 (39%), Positives = 31/53 (58%)
 Frame = +2

Query: 269 LGNLQYLKLSWCLYFNYFTGFVYSLCNRVPNVPA*WNVGSYKLSLSFNRIRDG 427
           LGNL+ L++   LY NYFTGF+ S  + +  + A        L+L FN++ DG
Sbjct: 63  LGNLKQLQIL-SLYDNYFTGFIPSSLSNLSQLVA--------LTLQFNKL-DG 105


>06_03_0449 + 20907491-20910146,20910313-20910782
          Length = 1041

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 272 GNLQYLKLSWCLYFNYFTGFVYSLCNRVPNV 364
           GNL+ L L + LYFN  TG + +   R+PN+
Sbjct: 319 GNLKNLSLLF-LYFNKVTGAIPASIGRLPNL 348


>01_06_1417 - 37189068-37190321
          Length = 417

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 269 LGNLQYLKLSWCLYFNYFTGFVYSLCNRVPNV 364
           L N+  L+L W +   +F  +V+ +  R PN+
Sbjct: 341 LDNVSVLELGWTVISEHFGPWVFGMIERCPNL 372


>05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157
          Length = 591

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 4   HENRITIHTQTANL*IRTIKS 66
           H N IT+ TQT NL ++T K+
Sbjct: 459 HSNLITLQTQTTNLKLQTSKN 479


>03_06_0513 -
           34432798-34433043,34433272-34433436,34433557-34433842,
           34434972-34435054,34435388-34435495,34435687-34435944,
           34436388-34436555,34436865-34437090,34437923-34438035,
           34438180-34438548,34439475-34439516,34439576-34439686,
           34439883-34440086
          Length = 792

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 267 SWGIFNILNCHGVFILIISPALC 335
           SWG F  L  H  F+  I P++C
Sbjct: 75  SWGSFLFLPVHDAFLSQIEPSMC 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,798,680
Number of Sequences: 37544
Number of extensions: 165169
Number of successful extensions: 323
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)