Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0707
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40945-4|AAA81722.2|  318|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AC025726-9|AAK73924.1|  594|Caenorhabditis elegans Hypothetical ...    26   10.0 

>U40945-4|AAA81722.2|  318|Caenorhabditis elegans Hypothetical
           protein F10D7.4 protein.
          Length = 318

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 114 SFIDEDPCIWSYTKKKSEILLFVNKRSKQS 203
           SFI E PC+W+  K+K  I  F+ K   ++
Sbjct: 220 SFIIEPPCVWAGNKQKG-IFRFIVKLENEA 248


>AC025726-9|AAK73924.1|  594|Caenorhabditis elegans Hypothetical
           protein Y71G12B.23a protein.
          Length = 594

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +3

Query: 222 VFFFKVSLNSRFFHNSWGIFNIL--NCH--GVFILIISP 326
           VFFFK+     F H  W +F +L  +CH   V+  ++ P
Sbjct: 547 VFFFKLDGIVAFAHAIWHLFVLLGASCHTYAVYAFLLGP 585


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,387,177
Number of Sequences: 27780
Number of extensions: 180478
Number of successful extensions: 350
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)