Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0704
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   2.1  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   2.1  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   2.7  
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    25   3.6  
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    25   6.3  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   6.3  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   6.3  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 98  VFWGYIVLFGLWYSGYLVVTNW 33
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 159 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVKLPS-LKFQKKKNLVLLMQKVLPTQLPS 335
           +KSS + D    S +I  +   + P ++KTE   PS ++ +K  +       V+P ++P+
Sbjct: 535 SKSSVLEDKHENSVEIDKKADDSLPSNNKTEGYTPSVVREEKNYSEPNASPSVIPPRVPT 594


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +2

Query: 266 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPTVESDAAAIPEIKTPEA 421
           A   K+ +PS  +   +A   +  PN VK +  D+ P   +      +I  PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 180 DAEAKSADIKVEEPAAQPEDSKTEVKLPSLKFQKKKNLVLLM 305
           DAE+ +    +E+   + +D  T + L  +KFQ+  +LV+ +
Sbjct: 214 DAESFTPTQVIEDIVYEQDDQPTIIPLRFVKFQRVNSLVIFI 255


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 254 KATVAEISKEEKPSATDAEGSADSAAII 337
           + TVA+I KEE P  T      DSAA++
Sbjct: 202 RKTVAKIFKEEYPHLTLKNQLIDSAAML 229


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 1   RHEKRRKPNLLQLVTTRYPLYQRPKRT 81
           R E+RR+ N  +   ++YP   RP+RT
Sbjct: 73  RGERRRRENFRESAASKYP---RPRRT 96


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 165 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVKLPSLKFQKKK 287
           ++E+   + +  D     P+ + E   TE + PS+  Q+K+
Sbjct: 376 ATEVSSEKVEKVDGNTSSPSKEEEKPSTEPEKPSVVTQRKE 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,339,633
Number of Sequences: 5004
Number of extensions: 20297
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)