Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0704
         (421 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0505 - 3759254-3759490,3759846-3759989,3760135-3760347,376...    28   3.5  
09_02_0156 + 5070962-5072351,5072466-5073139                           27   4.6  
04_01_0611 - 8029101-8029205,8029985-8030107,8030191-8030556,803...    27   4.6  
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69...    27   4.6  
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444...    27   4.6  
01_06_0599 - 30513858-30514079,30514157-30514588,30514683-30514823     27   4.6  
06_03_0589 - 22572914-22573035,22573353-22573412,22573554-22573692     27   6.1  

>07_01_0505 -
           3759254-3759490,3759846-3759989,3760135-3760347,
           3760439-3760990,3761339-3761806,3761959-3762023,
           3762133-3762265,3763798-3764022
          Length = 678

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 207 KVEEPAAQPEDSKTEVKLPSLKFQKKKNLV 296
           K E PAA P+   +   + SLK QKK NL+
Sbjct: 192 KTENPAALPQGDVSANGVDSLKGQKKTNLL 221


>09_02_0156 + 5070962-5072351,5072466-5073139
          Length = 687

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 22/78 (28%), Positives = 29/78 (37%)
 Frame = -1

Query: 247 VFESSG*AAGSSTLISADFASASGISDDFAXXXXXXXXXXXXXXXFAISESSGAISSFLA 68
           VF  SG A  + TL  A   +A+G+ D                     + SSG + SF  
Sbjct: 79  VFIYSGFAHNNITLDGAAMVTANGLLDITNGSTRLNGHAFYPTPLPFCNFSSGLVQSFST 138

Query: 67  SGIAGTSSLLTGAGSAFF 14
           S + G  S     G  FF
Sbjct: 139 SFVFGVQSTYPSQGFTFF 156


>04_01_0611 -
           8029101-8029205,8029985-8030107,8030191-8030556,
           8030639-8031124
          Length = 359

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 177 PDAEAKSADIKVEEPAAQPEDSKTEVKLPSLK 272
           PD   + A I VEE   + ED K EV +PS K
Sbjct: 156 PDPRRRKAKI-VEEDQEEEEDVKNEVAVPSRK 186


>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
            693391-693518,693951-694010,694113-694163,694704-694821,
            694990-695915,695916-697707,697810-697943,698029-698526
          Length = 1774

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
 Frame = +3

Query: 54   PAIPEAKK--------DDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIK 209
            P IPE+K+         + +P++ DI                  +S  +P++ + + DIK
Sbjct: 1272 PQIPESKELSQQSKILPESSPDNHDIKCEYSSPTPIPESKELSLQSKILPESSSDNQDIK 1331

Query: 210  VEEPAAQPEDSKTEV 254
             E+P+  P     EV
Sbjct: 1332 CEDPSPTPISKSKEV 1346


>01_06_1519 +
           37942389-37943702,37944142-37944266,37944358-37944499,
           37944602-37944848,37946139-37946196,37947629-37947913,
           37947988-37948120
          Length = 767

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +3

Query: 168 SEIPDAEAKSADIKVEEP---AAQPEDSKTEVKLPSLKFQKKK 287
           +E P AEA S + K EEP   AA  E +K E K  +   ++ K
Sbjct: 167 TEEPKAEASSEEAKTEEPKAEAAADEPAKEESKAEAAPAEEAK 209


>01_06_0599 - 30513858-30514079,30514157-30514588,30514683-30514823
          Length = 264

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 263 VAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAA 391
           VA +  +E+  A D E   D   ++ +++K   L P+VE DAA
Sbjct: 187 VAVLKVDEQLRAEDVEVYYDPGELLGDLLKGPLLVPSVEKDAA 229


>06_03_0589 -
          22572914-22573035,22573353-22573412,22573554-22573692
          Length = 106

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 21 AEPAPVSNDEVPAIPEAKKDDIAP 92
          A P PV   ++PA P AK  + +P
Sbjct: 22 ATPVPVPGSDLPAAPAAKSQEASP 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,647,351
Number of Sequences: 37544
Number of extensions: 129007
Number of successful extensions: 500
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)