Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0704
         (421 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.68 
SB_58663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_396| Best HMM Match : DUF217 (HMM E-Value=4.3)                      28   3.6  
SB_24455| Best HMM Match : Chromadorea_ALT (HMM E-Value=3.8)           28   3.6  
SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.8  
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)               27   4.8  
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)                 27   4.8  
SB_55742| Best HMM Match : Ribosomal_L13 (HMM E-Value=5.1)             27   6.3  
SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_21827| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_48635| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083)                  27   8.3  

>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +3

Query: 192 KSADIKVEEPAAQPEDSKTEV---KLPSLKFQKKKNLVLLMQKVLPTQLPSFPTW 347
           ++ DI VE PA+    +KTE    K    KF++ +    L+ +VL +  P+ PT+
Sbjct: 781 RNEDIVVEVPASNEPAAKTEDEIRKAEMCKFEQAQEAEDLISEVLKSYAPTLPTY 835


>SB_58663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +3

Query: 180 DAEAKSADIKVEEPAAQPEDSKTEVKLPSLKFQKKKNLVLLMQKVLPTQ 326
           +A+ K AD+ + E  A+ +  + +    S K +K + +++ ++KVLP Q
Sbjct: 649 EAQVKHADMTIREQKAKMQSFENQ----SEKVKKTRKMLIEVEKVLPVQ 693


>SB_396| Best HMM Match : DUF217 (HMM E-Value=4.3)
          Length = 262

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 204 IKVEEPAAQPED-SKTEVKLPSLKFQKKKNLV 296
           ++VEE AA+ E   K EVKL SLK   +KN +
Sbjct: 77  VRVEENAAKEEYIEKLEVKLDSLKQYTRKNSI 108


>SB_24455| Best HMM Match : Chromadorea_ALT (HMM E-Value=3.8)
          Length = 362

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 171 EIPDAEAKSADIKVEEPAAQPEDS-KTEVKLPSLKFQKKKNLVLLMQKVLPTQLPSFPTW 347
           E+ DA     D +VEEPA+  ++S KT++  P +  Q     + L  +    +   +  W
Sbjct: 73  EVDDAALDDEDEQVEEPASDTDESGKTDLNDPMIDDQDADKEIELQARGPKKEYKPWSAW 132

Query: 348 *RRSTW 365
               TW
Sbjct: 133 ---QTW 135


>SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 624

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 21/66 (31%), Positives = 27/66 (40%)
 Frame = +3

Query: 165 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVKLPSLKFQKKKNLVLLMQKVLPTQLPSFPT 344
           SS + DA+ KS D  V  P       KT    PS+    +K      Q  L   + S PT
Sbjct: 64  SSVVSDADEKSNDHDVRTPPKDGSSFKTPPTSPSILITSEKG----GQNALLASIKSTPT 119

Query: 345 W*RRST 362
             RR +
Sbjct: 120 LSRRES 125


>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 165 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVKLP 263
           ++E+P  +A ++  + E PAA+PE +  E + P
Sbjct: 587 TAEVPIEDADTSTEEAESPAAEPEVAVKEAEAP 619


>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
          Length = 654

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = +3

Query: 9   EEKKAEPAPVSNDE-VPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDA 185
           EE+K++   VS ++  PA  E+  DD + +DS                       E   +
Sbjct: 41  EEEKSKKKAVSKEKKTPAKQESSSDDSSSDDSSDEDTKMPTKSKLKNGTKTKAKEESSSS 100

Query: 186 EAKSADIKVEEPAAQPEDSKTEVKLPS 266
           ++ S D   E PA +P+ +K    + S
Sbjct: 101 DSSSED---EPPAKRPKSAKVSKPVAS 124


>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
          Length = 440

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = +3

Query: 9   EEKKAEPAPVSNDE-VPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDA 185
           EE+K++   VS ++  PA  E+  DD + +DS                       E   +
Sbjct: 284 EEEKSKKKAVSKEKKTPAKQESSSDDSSSDDSSDEDTKMPTKSKLKNGTKTKAKEESSSS 343

Query: 186 EAKSADIKVEEPAAQPEDSKTEVKLPS 266
           ++ S D   E PA +P+ +K    + S
Sbjct: 344 DSSSED---EPPAKRPKSAKVSKPVAS 367


>SB_55742| Best HMM Match : Ribosomal_L13 (HMM E-Value=5.1)
          Length = 141

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 36 VSNDEVPAIPEAKKDDIAPE 95
          +SNDE PA+ E ++ D APE
Sbjct: 28 LSNDESPALAEKERHDKAPE 47


>SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 165 SSEIPDA-EAKSADIKVEEPA--AQPEDSKTEVKLPSLKFQKKKNLVLLMQK 311
           +S++PD  E+   D   ++P+  A P DS   +  P  +    KN+ +L +K
Sbjct: 157 NSQVPDVLESPEPDDAQQQPSQVAMPPDSSQAITRPRRELATTKNIKVLSEK 208


>SB_21827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +2

Query: 215 RTSCSA*RFKN*SKATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAA 394
           RTS +  RFK+ SK    EIS      +  +E S        N    ++L P   S+ A 
Sbjct: 76  RTSKTCHRFKSKSKGLAIEISDSNSSCSAQSENSTPGDLDEVNSHGSVELFPDGSSEDAE 135

Query: 395 IPEIKTPEA 421
              +   +A
Sbjct: 136 NSNVSLTDA 144


>SB_48635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 3   AREEKKAEPAPVSNDEVPAIPEAK-KDDIAPEDS 101
           A +EK  EPA    DE PA  E + K + A E+S
Sbjct: 339 ASQEKVEEPAAPGTDEAPAAGEEEAKAEAAEEES 372


>SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083)
          Length = 1466

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 6    REEKKAEPAPVSNDEVPAIPEAKKDDIAPE 95
            RE +   P P  +D+    P++K+D  APE
Sbjct: 940  RERQDGSPRPSGHDKHGVGPDSKRDSPAPE 969


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,534,225
Number of Sequences: 59808
Number of extensions: 151579
Number of successful extensions: 708
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)