Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0704
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   1.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   1.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   4.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    20   9.9  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = +3

Query: 228 QPEDSKTEVKLPSLKFQ 278
           QP+ S++E+++P +KF+
Sbjct: 438 QPQYSQSELQMPGVKFE 454


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = +3

Query: 228 QPEDSKTEVKLPSLKFQ 278
           QP+ S++E+++P +KF+
Sbjct: 438 QPQYSQSELQMPGVKFE 454


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = -3

Query: 230  LSSWFFHFNISRFC 189
            +S+W +H N+++ C
Sbjct: 1674 MSTWGYHHNVNKHC 1687


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 177 ESRMILLPGLFLRFSL 130
           ES  +LLP ++LR++L
Sbjct: 249 ESEDVLLPSVYLRWNL 264


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 52  YPLYQRPKRTI*PQKT 99
           +P Y+RP+ T  P+ T
Sbjct: 156 HPRYKRPRTTFEPRAT 171


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 55  PLYQRPKRTI*PQKTP 102
           PLYQ+P+R    + TP
Sbjct: 238 PLYQQPERHYERRATP 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,770
Number of Sequences: 438
Number of extensions: 1241
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)