Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0704
(421 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 29 1.7
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate... 28 2.2
At3g49990.1 68416.m05466 expressed protein 28 3.0
At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein ... 27 3.9
At1g56660.1 68414.m06516 expressed protein 27 3.9
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 27 5.2
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 27 5.2
At4g38390.1 68417.m05427 expressed protein contains Pfam PF03138... 26 9.0
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 26 9.0
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 45 DEVPAIPEAKKDDIAPE 95
D+ +IPEAK+DD APE
Sbjct: 197 DDTASIPEAKEDDAAPE 213
>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
contains weak similarity to vacuolar calcium binding
protein [Raphanus sativus] gi|9049359|dbj|BAA99394
Length = 152
Score = 28.3 bits (60), Expect = 2.2
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Frame = +3
Query: 12 EKKAEPAPVSNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEA 191
EK E + E P + E KKD+ AP ++ + K E+ + +
Sbjct: 61 EKPIEETEEAQVETPEVVEIKKDEEAPVETPVV---VEDESKTEEVVEAKKEEEVEEKKT 117
Query: 192 KSADIKVEE---PAAQPEDSKTEVKL 260
+ A + VEE P A+ E E +
Sbjct: 118 EEAPVVVEEEKKPEAEEEKPAVEASV 143
>At3g49990.1 68416.m05466 expressed protein
Length = 502
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 174 IPDAEAKSADIKVEEPAAQPEDSKTEVKLPSLKFQKKKNLV 296
+P A+ D+K E P A+P KT + + +++KN V
Sbjct: 422 LPGRRAEQTDVKAEIPKAEPIKRKTHGQESKEEKKERKNAV 462
>At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 586
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 147 FLRFSLQERFPVSRYRSLLGLYRPFWPLV 61
FL F E PV ++ L L RP WPL+
Sbjct: 25 FLSFPRPENTPVQLFQLLHTLERPGWPLL 53
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 27.5 bits (58), Expect = 3.9
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 162 KSSEIP-DAEAKSADIKVEEPAAQ-PEDSKTEVKLPS 266
K E P + E S DIK+EEP A+ E+ TE K S
Sbjct: 381 KKKENPLETEVMSRDIKLEEPEAEKKEEDDTEEKKKS 417
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 263 VAEISKEEKPSATDAEG--SADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTP 415
V E SK+ K + + +A A ++P+ I AP+V + +A KTP
Sbjct: 364 VQESSKDAKVDSEACQNHPTASPATVVPDQDSTITAAPSVTQEDSAFNTEKTP 416
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 263 VAEISKEEKPSATDAEG--SADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTP 415
V E SK+ K + + +A A ++P+ I AP+V + +A KTP
Sbjct: 625 VQESSKDAKVDSEACQNHPTASPATVVPDQDSTITAAPSVTQEDSAFNTEKTP 677
>At4g38390.1 68417.m05427 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'growth regulator protein -related' based on similarity
to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
tabacum], which, due to scienitific fraud was retracted.
Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
PMID:10400497.
Length = 551
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 195 SADIKVEEPAAQPEDSKTEVKLPSLKFQKKKNLVLLMQKVLP 320
S D+K+ + + E S+ L S++ +K +Q+VLP
Sbjct: 187 SKDVKIIKELPKEEQSRISTSLQSMRVPRKCTPSCYLQRVLP 228
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 159 AKSSEIPDAEAKSADIKVEEPAAQPE 236
A E P AE ++ VEE AAQPE
Sbjct: 308 AALGETPAAERPASSTPVEEKAAQPE 333
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,957,580
Number of Sequences: 28952
Number of extensions: 103916
Number of successful extensions: 437
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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