Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0698
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242           30   0.71 
04_03_0865 + 20402711-20404057                                         29   1.6  
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605...    28   3.8  
09_04_0039 + 14023383-14023727                                         27   5.0  
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965...    27   5.0  
09_03_0081 + 12163213-12164088                                         27   6.6  
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565...    27   6.6  
04_04_0657 + 27000894-27001094,27001188-27001544,27002387-27002581     27   8.7  

>09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242
          Length = 509

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -1

Query: 351 LLDLLEGVAFECAYGFHL--STVSAVLFELFAGLDFISVVLKVEEVTKLYSSPSL 193
           L+D+L G+  +  +GFHL  S + A++ ++FAG    S       +++L  +PS+
Sbjct: 274 LVDVLIGLQGKGGFGFHLDNSKIKAIILDMFAGGTGTSASAMEWGMSELMRNPSV 328


>04_03_0865 + 20402711-20404057
          Length = 448

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 147 SPAKPPTRSPRPWSSVRMVTNTI*SP 224
           SPAK P + P  WS  R++   + SP
Sbjct: 137 SPAKKPAKQPSRWSPARVIAMALPSP 162


>02_02_0007 +
           6056281-6057024,6057273-6057539,6057622-6057765,
           6057844-6058191,6058713-6059102
          Length = 630

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = -1

Query: 378 VSDFKTVGGLLD---LLEGVAFECAYGFHLSTVSAVLFELFAGLDFISVVLKVEEVTKLY 208
           + DF T  G+     +L G      +G+ ++        L  G+ F S++L  E +T L 
Sbjct: 396 MGDFSTATGIATFTMMLLGRVILRKFGWGVAATITPAVLLLTGVGFFSLILFGEPLTPLM 455

Query: 207 SSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFS 103
           +       T+G+T L A   +     +F  S+K+S
Sbjct: 456 A-------TLGMTPLLAAVYVGAMQNIFSKSAKYS 483


>09_04_0039 + 14023383-14023727
          Length = 114

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = +2

Query: 188 LRKDGDEYNLVTSSTFKTTEMKSSPAKSSKRTALTVLR*NPYAHSKATPSSKSRRP 355
           L    D+  + T S  +T    SSP  S   T   VL   PY  S  +PS     P
Sbjct: 51  LHTTADDAMVETRSRTETCIASSSPPPSQPTTPRRVLELAPYVLSSMSPSDARELP 106


>03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,
            9652201-9652287,9652657-9653669,9653832-9654854,
            9654946-9654969
          Length = 1029

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 295  HRQRGPLRTLRRA*LHLSGLEG*RGD*IVFVTILTELHGRGD 170
            H  RG  R +RR  +H  G+EG   +  +    L ELH + +
Sbjct: 896  HDDRGMQRNMRRCGMHHGGVEGDSFEPHLHPAQLAELHAKAE 937


>09_03_0081 + 12163213-12164088
          Length = 291

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 303 EIRMHIRRQHPQASPEGPR 359
           + R+H++RQ  QA P GPR
Sbjct: 66  QARLHLQRQAAQAGPLGPR 84


>04_04_0456 -
           25355409-25355751,25356047-25356205,25356317-25356513,
           25356602-25356794,25357044-25358287
          Length = 711

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 121 HEDHRRGSDHPQSRQRGHPDR 183
           H  HRRG  H Q +   HP R
Sbjct: 276 HHSHRRGIRHKQQQHHQHPRR 296


>04_04_0657 + 27000894-27001094,27001188-27001544,27002387-27002581
          Length = 250

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 265 EEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVRE 387
           E+F  D A  A   S   F+G  L Q+   PDG      RE
Sbjct: 167 EDFLVDEATAASSSSDGLFQGGLLAQIGGVPDGYAAWAGRE 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,316,249
Number of Sequences: 37544
Number of extensions: 236945
Number of successful extensions: 660
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)