Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0698
(435 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.18
SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32) 30 0.72
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34) 29 2.2
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_58915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_34953| Best HMM Match : Homeobox (HMM E-Value=1e-25) 27 6.7
SB_5386| Best HMM Match : GRP (HMM E-Value=0.012) 27 6.7
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10) 27 8.8
SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29) 27 8.8
SB_36184| Best HMM Match : UBA (HMM E-Value=2.4e-09) 27 8.8
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 27 8.8
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 27 8.8
>SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 32.3 bits (70), Expect = 0.18
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 262 GEEFEEDRADGAKVKSVCTFEGNTLK 339
G+E E+D DG+K S CTFEG T++
Sbjct: 25 GDEHEKDLRDGSKRISGCTFEGITMQ 50
>SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)
Length = 947
Score = 30.3 bits (65), Expect = 0.72
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 146 ITRKAANAVTPTVELRKDGDEYNLV--TSSTFKTTEMKSSPAKSSKRTALTVLR*NPYAH 319
+TRKAA + ++ G+ Y+++ T T + SS + RT+ + NP
Sbjct: 843 VTRKAARVLRTSIPRSGSGNSYSVMATTIPTSSSATSDSSSPHPAMRTSSFTISGNPSPA 902
Query: 320 SKATPSSKSRRPPTVL 367
++TP + R +L
Sbjct: 903 MRSTPDRQRRTYQQIL 918
>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
Length = 747
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -1
Query: 138 TPMVFMNSSKFSEEVILYFLPTNSIFID*LYRFKRKVFNTSVFLV 4
TP++ + +SK ++++F P NS+ LY F K F +F++
Sbjct: 527 TPLIDVTASK---TLLVFFFPINSLCNPFLYAFFTKAFKRELFVL 568
>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 247 DEVKPGEEFEEDRADGAKVKSVCTFEGNTLKQ 342
DE KP +E + D+ DGAK + N L +
Sbjct: 287 DESKPADENKNDKTDGAKTAKKINIKENPLSE 318
>SB_58915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 27.9 bits (59), Expect = 3.8
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +2
Query: 188 LRKDGDEYNLVTSSTFKTTEMKSSPAKSSKRTALTVLR*NPYAHSKATPSSKSRRPPTVL 367
LRK E N T ++ K +K P S+ A T P A TP+ PP ++
Sbjct: 113 LRKHLGEKNTKTDNSIKKATLKDLPNTPSQTLATT-----PTAPMVTTPAPPPPPPPPLI 167
Query: 368 KSLTSGNS 391
S TS +
Sbjct: 168 PSDTSAEA 175
>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 216 KLYSSPSLRSSTVGVTALAALRVIRPTPMV 127
+L+ SP+LRS +G+ +AL+ + P MV
Sbjct: 13 RLFHSPNLRSDAIGIFR-SALKAVTPQEMV 41
>SB_34953| Best HMM Match : Homeobox (HMM E-Value=1e-25)
Length = 200
Score = 27.1 bits (57), Expect = 6.7
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2
Query: 152 RKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKSSPAKSSKRTALTVLR 301
RK N + + D D Y TS+T + KSS + S KR L R
Sbjct: 48 RKMVNTIPMYEDADLDPDSYTENTSNTKSSPITKSSSSSSDKRDKLAKKR 97
>SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)
Length = 800
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 184 HGRGDRVGGFAGDQTHADG 128
HG GD GG GD H DG
Sbjct: 390 HGGGDHGGGDYGDGDHGDG 408
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -3
Query: 184 HGRGDRVGGFAGDQTHADGLHELIKVLGGSH 92
HG GD GG GD H G H GG H
Sbjct: 365 HGGGDHGGGDHGDGDHGGGDHGGGDHGGGDH 395
>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
Length = 172
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 59 IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTP 178
++M GK + D+F T+ G++ K ANA+ P
Sbjct: 70 VRMWIEGKTSCNFGGDTADDFQNTLKSGVVLCKLANAIQP 109
>SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29)
Length = 487
Score = 26.6 bits (56), Expect = 8.8
Identities = 20/88 (22%), Positives = 40/88 (45%)
Frame = +2
Query: 80 KKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKSS 259
KK + T++++ E + G G + + ++ + + + RK+ ++ KSS
Sbjct: 240 KKTRKTAAKDSSEVERIRGAGESSSEPSSKRSQSTKGRKNVNKAPSGVDGPLSDASGKSS 299
Query: 260 PAKSSKRTALTVLR*NPYAHSKATPSSK 343
SSK +T ++ + KA SSK
Sbjct: 300 KKASSKSPKVTKVKESSITSQKAPKSSK 327
>SB_36184| Best HMM Match : UBA (HMM E-Value=2.4e-09)
Length = 1337
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 126 RPSAWV*SPAKPPTRSPRPWSSVRM 200
RPS+++ P PP S W+++RM
Sbjct: 181 RPSSYLHDPLGPPPESEDVWTTLRM 205
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 26.6 bits (56), Expect = 8.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 147 SPAKPPTRSPRPWSSVR 197
+P PP +PRPW +R
Sbjct: 1388 TPTSPPPPNPRPWGGLR 1404
>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2179
Score = 26.6 bits (56), Expect = 8.8
Identities = 25/73 (34%), Positives = 33/73 (45%)
Frame = +2
Query: 194 KDGDEYNLVTSSTFKTTEMKSSPAKSSKRTALTVLR*NPYAHSKATPSSKSRRPPTVLKS 373
K Y +TSS T K + ++S+ R A + H+K T SSKS T+
Sbjct: 1710 KSSTRYAKLTSSKSTTYHAKLTSSESATRYAKRTSSKSTTYHAKLT-SSKS---ATLYAK 1765
Query: 374 LTSGNSXLRR*KL 412
LTS S R KL
Sbjct: 1766 LTSSKSATRYAKL 1778
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +2
Query: 227 STFKTTEMKSSPAKSSKRTALTVLR*NPYAHSKATPSSKSRRPPTVLKSLTSG 385
ST E S+P +S T L P A +TP + S P S T G
Sbjct: 984 STTPGAESSSTPGAASSSTPGAALSRTPGAAPSSTPGAASSTTPGAAPSSTPG 1036
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,641,364
Number of Sequences: 59808
Number of extensions: 250059
Number of successful extensions: 813
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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