Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0698
(435 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19970.1 68416.m02527 expressed protein 27 4.1
At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to... 27 4.1
At1g27040.2 68414.m03296 nitrate transporter, putative contains ... 27 4.1
At1g27040.1 68414.m03297 nitrate transporter, putative contains ... 27 4.1
At5g43230.1 68418.m05283 hypothetical protein 27 7.2
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 27 7.2
At1g52120.1 68414.m05881 jacalin lectin family protein simiilar ... 27 7.2
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 26 9.5
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 26 9.5
>At3g19970.1 68416.m02527 expressed protein
Length = 434
Score = 27.5 bits (58), Expect = 4.1
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -1
Query: 291 VSAVLFELFAGLDFIS-VVLKVEEVTKLYSSPSLRSSTVGVTALAALRVI 145
VS V A L F+S + + V V L S+PS +T VT+L+ALR +
Sbjct: 62 VSQVSASKLADLSFVSRICVPVPNVDLLASNPSCSLAT-SVTSLSALRSV 110
>At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to
nitrate transporter (NTL1) GI:3377517 [Arabidopsis
thaliana]
Length = 585
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 89 KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDG 202
K T +E ++ IGVGL+ A AV VE+++ G
Sbjct: 414 KATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKG 451
>At1g27040.2 68414.m03296 nitrate transporter, putative contains
Pfam profile: PF00854 POT family; similar to nitrate
transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
Length = 563
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 89 KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 196
K+T SE ++ IGVGL+ A AV VEL++
Sbjct: 393 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 428
>At1g27040.1 68414.m03297 nitrate transporter, putative contains
Pfam profile: PF00854 POT family; similar to nitrate
transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
Length = 567
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 89 KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 196
K+T SE ++ IGVGL+ A AV VEL++
Sbjct: 397 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 432
>At5g43230.1 68418.m05283 hypothetical protein
Length = 628
Score = 26.6 bits (56), Expect = 7.2
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Frame = +2
Query: 56 SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK----DGDEYNLVT 223
SI++ F G K + + K VGLIT + + T EL++ + Y++V
Sbjct: 114 SIQLHFDGHKDDSSHKKASGVINK---VGLITPQDSKTETLEDELKEAAVLEAAIYSVVA 170
Query: 224 SSTFKTTEMKSSPAKSSKRTALTVLR*NPYAHSKATPSSKSRRPPTVLKSLTSGNSXLR 400
T +++ + PA+ R L + N HSK ++++ +L S GN R
Sbjct: 171 EHTSSMSKVHA-PARRLARFYLHACKGNGSDHSKRATAARAAVSGLILVSKACGNDVPR 228
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +1
Query: 250 EVKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAXMTAK 426
E+ P E D D + CTF+G +K D L +T + E +++A K
Sbjct: 175 ELWPAFSGEHDNMDAQSLVK-CTFQGGRCSNEEKPVDRLLITLMSECIESDVQAQSVVK 232
>At1g52120.1 68414.m05881 jacalin lectin family protein simiilar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile PF01419
jacalin-like lectin domain
Length = 450
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 194 KDGDEYNLVTSSTFKTTEMKSSP--AKSSKRTAL 289
+D L+TS TFKT+ ++SP K+S +T L
Sbjct: 372 RDNPGGTLITSLTFKTSNNRTSPILGKASNKTFL 405
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 127 DHRRGSDHPQSRQRGHPDRG 186
D RR S P R+RG PD G
Sbjct: 187 DRRRRSPSPYRRERGSPDYG 206
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 127 DHRRGSDHPQSRQRGHPDRG 186
D RR S P R+RG PD G
Sbjct: 187 DRRRRSPSPYRRERGSPDYG 206
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,898,978
Number of Sequences: 28952
Number of extensions: 181206
Number of successful extensions: 584
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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