Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0684
         (428 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VUR4 Cluster: Ubiquitin carrier protein; n=7; Eukaryo...    43   0.003
UniRef50_O97292 Cluster: Putative uncharacterized protein MAL3P7...    33   1.9  
UniRef50_Q8BXK3 Cluster: 10 days neonate medulla oblongata cDNA,...    33   3.3  
UniRef50_UPI00006CF2BD Cluster: Leucine Rich Repeat family prote...    32   4.4  
UniRef50_Q16M76 Cluster: Predicted protein; n=2; Culicidae|Rep: ...    31   7.7  

>UniRef50_Q9VUR4 Cluster: Ubiquitin carrier protein; n=7;
           Eukaryota|Rep: Ubiquitin carrier protein - Drosophila
           melanogaster (Fruit fly)
          Length = 341

 Score = 42.7 bits (96), Expect = 0.003
 Identities = 19/23 (82%), Positives = 22/23 (95%)
 Frame = +3

Query: 360 TVPTSSALRALALEYKSLQEEPV 428
           T P+SSA+RALA+EYKSLQEEPV
Sbjct: 57  TTPSSSAVRALAMEYKSLQEEPV 79


>UniRef50_O97292 Cluster: Putative uncharacterized protein MAL3P7.22;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein MAL3P7.22 - Plasmodium falciparum
            (isolate 3D7)
          Length = 2706

 Score = 33.5 bits (73), Expect = 1.9
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 128  TLKSRRNNRPKAHDQLNNNEKAKHRSTKRNPKK 30
            T +  RNNR   ++  NNN K++ RST+ N KK
Sbjct: 2602 TSQRTRNNRRNNNNNNNNNRKSRKRSTRTNRKK 2634


>UniRef50_Q8BXK3 Cluster: 10 days neonate medulla oblongata cDNA,
           RIKEN full-length enriched library, clone:B830003C01
           product:hypothetical Lysine-rich region containing
           protein, full insert sequence; n=1; Mus musculus|Rep: 10
           days neonate medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:B830003C01 product:hypothetical
           Lysine-rich region containing protein, full insert
           sequence - Mus musculus (Mouse)
          Length = 125

 Score = 32.7 bits (71), Expect = 3.3
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = -1

Query: 197 ILQHPQVR----VTHFKRQPLNLC**FTLKSRRNNRPKAHDQLNNNEKAKH-RSTKRNPK 33
           +LQHPQV       HF      +    +L  ++N + K  +Q+NNN+K    +  K NP+
Sbjct: 24  LLQHPQVLPISLCIHFYVLSPRVKLSLSLSKKKNKKKKEKNQINNNKKPNETKQNKTNPQ 83

Query: 32  K 30
           K
Sbjct: 84  K 84


>UniRef50_UPI00006CF2BD Cluster: Leucine Rich Repeat family protein;
            n=1; Tetrahymena thermophila SB210|Rep: Leucine Rich
            Repeat family protein - Tetrahymena thermophila SB210
          Length = 1504

 Score = 32.3 bits (70), Expect = 4.4
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = -1

Query: 242  RHNNNELEILVNIASILQHPQVRVTHFKRQPLNLC**FTLKSRRNNRPKAHDQLNNN 72
            R  + ELE+  +I  +L+HPQV   + + Q L       L ++RNN  K  D+LN +
Sbjct: 1245 RKQHLELELFQDIQPMLEHPQVNQYYQEYQDLQ----NELDTQRNNLKKRMDKLNRS 1297


>UniRef50_Q16M76 Cluster: Predicted protein; n=2; Culicidae|Rep:
           Predicted protein - Aedes aegypti (Yellowfever mosquito)
          Length = 476

 Score = 31.5 bits (68), Expect = 7.7
 Identities = 22/88 (25%), Positives = 34/88 (38%)
 Frame = -3

Query: 279 SLCCPRIHRHFNSSQ*QRTRNFGKHSIDTAASTSTCHTLQTSTLKSLLIIYVEK*TKQ*T 100
           ++CCP   +HFNS    +      HSI+T   +      Q  T   L     +  T Q  
Sbjct: 365 AVCCPICQKHFNSELYLKRHYSSIHSINTGNQSDGEMVDQKPTTAQLATQQAQAQTPQQQ 424

Query: 99  QSTRSVKQQ*ESEAPFNET*SEENQLRA 16
           Q T   +QQ + +    +   +  Q  A
Sbjct: 425 QQTTQQQQQQQQQQQQQQAQQQSQQAPA 452


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 403,615,747
Number of Sequences: 1657284
Number of extensions: 7360218
Number of successful extensions: 17851
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17804
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20653970351
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)