Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0684
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    29   0.40 
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    26   2.2  
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr...    25   5.0  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    25   6.6  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    25   6.6  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   6.6  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    25   6.6  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    24   8.7  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    24   8.7  

>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 273 CCPRIHRHFNS-SQ*QRTRNFGKHSIDTAASTSTCHTLQTSTLKSLLII 130
           C   +H H N+  Q    +NFG + + T +  STC       +K + ++
Sbjct: 240 CIATLHGHKNTIMQASFQKNFGSNYLATVSRDSTCRVFDLRAMKDVRVL 288


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 278 LYAVHVSTGISTRHNNNELEILVNIASILQHPQVRV 171
           +Y + +   +STR  NNEL IL N  ++ Q P+ R+
Sbjct: 110 VYNLAMRIALSTRFINNELTILENPINLSQ-PKTRI 144


>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 209 LPKFLVRCYCDEL-KCRWIRGQHKEF 283
           LP+FL   YC +L K  ++ G  KEF
Sbjct: 84  LPRFLYLSYCGKLKKMSFLLGNTKEF 109


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 119 SRRNNRPKAHDQLNNNEKAKHRSTKRNPKKISY 21
           +  ++  KA  Q+NN +K  H S K   +  +Y
Sbjct: 267 ANNHHSEKAGTQINNKDKGSHNSAKPVQRSHTY 299


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 125 LKSRRNNRPKAHDQLNNNEKAKHRSTKRNPKKISYVRAT 9
           L++R     +A  Q +N++  +    K+  KK+  +RAT
Sbjct: 113 LEARLKGDKEARGQNSNDQPEESDDKKKRKKKVKEIRAT 151


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 166 CVTRTCGCCSIDAMFTKISSS 228
           C   TC  C+ID MF+ I +S
Sbjct: 183 CKRPTCMTCAIDDMFSSIYNS 203


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 113 RNNRPKAHDQLNNNEKAKHRSTKRN 39
           RN + K    ++NNE   H + KRN
Sbjct: 30  RNKKQKKWASVHNNEAQLHSANKRN 54


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 125 LKSRRNNRPKAHDQLNNNEKAKHRSTKR 42
           L+  R       +Q++NN    HR TKR
Sbjct: 114 LEEIRKRNQSRKNQMSNNSTTYHRETKR 141


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 101 PKAHDQLNNNEKAKHRSTKRNP 36
           PK +  +N N+  KH S+  NP
Sbjct: 562 PKGYMFVNENQSMKHESSVSNP 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,381
Number of Sequences: 5004
Number of extensions: 34226
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)