Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0684
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626...    28   2.8  
03_01_0296 + 2284385-2285629,2287632-2288594                           28   3.7  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    27   4.9  
03_02_0928 + 12464325-12464498,12466494-12466679,12466929-124670...    27   6.4  

>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
            24963146-24963943,24964140-24964422,24964500-24964951,
            24965744-24965870,24965950-24966074,24966188-24966858,
            24966976-24967093,24967177-24967293,24967564-24967658,
            24968152-24968303,24968858-24968913,24969001-24969218,
            24969842-24970239,24970345-24970628,24970730-24970836,
            24970882-24970968,24971729-24971990,24972228-24972503,
            24973197-24973254,24973437-24973756,24973889-24973999,
            24974183-24974350,24974494-24974622,24974731-24974820,
            24974934-24975040,24975133-24975281,24975584-24975666,
            24975749-24975844,24975957-24976079,24976180-24976263,
            24976371-24976511,24976652-24976951,24977386-24977453,
            24977540-24977642,24979363-24979524,24979613-24981230,
            24981270-24981661,24981689-24981991,24982078-24982161,
            24982296-24982448,24982678-24982841,24982915-24983062,
            24983209-24983331,24983409-24983496,24983686-24983867
          Length = 4177

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 32   SSDYVSLNGASLSHCCLTDRVLWVYCFVYFS 124
            SS  V LNG  L+H  +T R L++ C  ++S
Sbjct: 2626 SSSAVELNGVLLNHALVTFRELFLKCAQHYS 2656


>03_01_0296 + 2284385-2285629,2287632-2288594
          Length = 735

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 74  CCLTDRVLWVYC 109
           CCL DR+LW+ C
Sbjct: 430 CCLLDRILWLVC 441


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 206 CLPKFLVRCYCDELKCRWI 262
           C+ K  VRC C+ LK  WI
Sbjct: 671 CMKKVNVRCACNNLKKEWI 689


>03_02_0928 +
           12464325-12464498,12466494-12466679,12466929-12467021,
           12467212-12467394,12467506-12467608,12467695-12467865,
           12468086-12469084,12469178-12469254,12469485-12470337,
           12470878-12471000,12471526-12471878
          Length = 1104

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 110 NNRPKAHDQLNNNEKAKHRSTKRNPKKISYVRATS 6
           +N+  A  Q+NNN K +H S  R+P+++ Y +  S
Sbjct: 831 SNKKLAAKQINNNHK-EHLSFVRDPEQMPYNQVNS 864


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,535,014
Number of Sequences: 37544
Number of extensions: 185517
Number of successful extensions: 391
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)