Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0684
         (428 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      29   1.6  
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)           28   2.9  
SB_8109| Best HMM Match : 7tm_1 (HMM E-Value=4e-09)                    28   2.9  
SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)                     27   5.0  
SB_32857| Best HMM Match : TolA (HMM E-Value=1.1)                      27   6.6  

>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = +3

Query: 372  SSALRALALEYKSLQEEPV 428
            SSA+RAL LE K L EEPV
Sbjct: 1123 SSAVRALQLELKKLTEEPV 1141


>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
          Length = 3015

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = -1

Query: 338  IYSTFTT-YLNKII*TYHFGT-LYAVHVSTGISTRHNNNEL---EILVNIASIL 192
            I +T TT ++N  I T H  T +   H++T I+T H N  +    I+V I +I+
Sbjct: 1153 INTTITTAHINTTITTAHINTTITTAHINTTITTAHINTTITTAHIVVTIITII 1206



 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -1

Query: 338  IYSTFTT-YLNKII*TYHFGT-LYAVHVSTGISTRHNNNELEIL-VNIASILQHPQVRVT 168
            I +T TT ++N  I T H  T +   H++T I+T H N  +    +N      H    +T
Sbjct: 1108 INTTITTAHINTTITTAHINTTIPTAHINTTITTAHTNTTITTAHINTTITTAHINTTIT 1167


>SB_8109| Best HMM Match : 7tm_1 (HMM E-Value=4e-09)
          Length = 345

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
 Frame = +3

Query: 105 IVSSTFQRKLLTKI*GLTFEVCDTYLWMLQYRCY---VYQNF*FVVIVTS*NAGG--YVD 269
           I+S+ F    +     +  E     +W L++R     +Y  F  V  V+   +GG  YVD
Sbjct: 86  IISTAFMSTNMISFAFIAIERMHATVWPLRHRNTKPRMYIVFIVVTWVSGLGSGGLTYVD 145

Query: 270 SIKSSKVICLYNFV*IGSEG*INT*LTMSNTVPTSSALRALALEYKSLQEE 422
           +IKS++V+  Y FV I     + +  T+   +   + LR  +   +++Q+E
Sbjct: 146 TIKSARVV--YCFVLISFVALVVSYATIFIKIKKQNQLRNQSHLQRTIQKE 194


>SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)
          Length = 1656

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 21/85 (24%), Positives = 37/85 (43%)
 Frame = -3

Query: 315 SKQNYINISLWNSLCCPRIHRHFNSSQ*QRTRNFGKHSIDTAASTSTCHTLQTSTLKSLL 136
           SK+  +NI+L      P  H+H N+   ++     K        +S  H   ++TLK  L
Sbjct: 406 SKEKSVNINLMFGNSAPSEHQHENAHDKEQADRQDKPQFSGQDKSSEQHK-NSTTLKIKL 464

Query: 135 IIYVEK*TKQ*TQSTRSVKQQ*ESE 61
           ++  E  +K   QS     ++ + E
Sbjct: 465 VVSPEMGSKARQQSPAPYMERQDDE 489


>SB_32857| Best HMM Match : TolA (HMM E-Value=1.1)
          Length = 448

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 122 KSRRNNRPKAHDQLNNNEKAKHRSTKRNPK 33
           K R N     HD+  NNE+      +RN K
Sbjct: 206 KERSNEEENRHDEKRNNEEEDRHDEERNNK 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,957,261
Number of Sequences: 59808
Number of extensions: 246559
Number of successful extensions: 643
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)