Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0684
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-12|AAK73914.3|  243|Caenorhabditis elegans Ubiquitin co...    29   1.9  
U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated p...    28   2.5  
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p...    28   2.5  
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p...    28   2.5  
AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucle...    28   2.5  
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle...    28   2.5  

>AC025726-12|AAK73914.3|  243|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein3 protein.
          Length = 243

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 354 SNTVPTSSALRALALEYKSLQEEPV 428
           S    +S ALRAL +E K+LQ +PV
Sbjct: 3   SKASTSSGALRALTMELKNLQSQPV 27


>U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated
            protein 73, isoform b protein.
          Length = 1638

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 326  FTTY-LNKII*TYHFGTLYAVHVSTGISTRHNNNELEILVNIASILQHPQVRVTHFK 159
            +T Y +NK    +   T  AV   TGI  RH    LEI   IAS+L  P  R+T ++
Sbjct: 1298 YTEYCVNKEQKNHVIATPDAVSFFTGIRERHG---LEINNEIASLLIKPVQRITRYR 1351


>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
            protein 73, isoform f protein.
          Length = 2140

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 326  FTTY-LNKII*TYHFGTLYAVHVSTGISTRHNNNELEILVNIASILQHPQVRVTHFK 159
            +T Y +NK    +   T  AV   TGI  RH    LEI   IAS+L  P  R+T ++
Sbjct: 1298 YTEYCVNKEQKNHVIATPDAVSFFTGIRERHG---LEINNEIASLLIKPVQRITRYR 1351


>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
            protein 73, isoform a protein.
          Length = 2488

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 326  FTTY-LNKII*TYHFGTLYAVHVSTGISTRHNNNELEILVNIASILQHPQVRVTHFK 159
            +T Y +NK    +   T  AV   TGI  RH    LEI   IAS+L  P  R+T ++
Sbjct: 1298 YTEYCVNKEQKNHVIATPDAVSFFTGIRERHG---LEINNEIASLLIKPVQRITRYR 1351


>AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucleotide
            exchange factorUNC-73B protein.
          Length = 1638

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 326  FTTY-LNKII*TYHFGTLYAVHVSTGISTRHNNNELEILVNIASILQHPQVRVTHFK 159
            +T Y +NK    +   T  AV   TGI  RH    LEI   IAS+L  P  R+T ++
Sbjct: 1298 YTEYCVNKEQKNHVIATPDAVSFFTGIRERHG---LEINNEIASLLIKPVQRITRYR 1351


>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucleotide
            exchange factorUNC-73A protein.
          Length = 2488

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 326  FTTY-LNKII*TYHFGTLYAVHVSTGISTRHNNNELEILVNIASILQHPQVRVTHFK 159
            +T Y +NK    +   T  AV   TGI  RH    LEI   IAS+L  P  R+T ++
Sbjct: 1298 YTEYCVNKEQKNHVIATPDAVSFFTGIRERHG---LEINNEIASLLIKPVQRITRYR 1351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,640,297
Number of Sequences: 27780
Number of extensions: 187232
Number of successful extensions: 454
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)