Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0684
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   1.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   5.8  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   7.7  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -1

Query: 119 SRRNNRPKAHDQLNNNE 69
           +++NN+  A++Q NNN+
Sbjct: 433 NQKNNKKNANNQKNNNQ 449


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 70  RKRSTVQRNVIRRKSATCV 14
           R++S  QRNVIR   A  V
Sbjct: 274 RRKSAAQRNVIRMLVAVVV 292


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 251 ISTRHNNNELEILVNIASILQHPQVRVTH 165
           +S  HN N   +  N+A+ + H Q  V H
Sbjct: 675 LSPDHNGNYSCVARNLAAEVSHTQRLVVH 703


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 122 KSRRNNRPKAHDQLNNNEKAKHRSTKRNPKKISY 21
           K+  NN    ++  NNN    + +   N KK+ Y
Sbjct: 321 KTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYY 354


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 113 RNNRPKAHDQLNNNEKAKHRSTKRNPKKISYVR 15
           R+  PK    L+NN K  + +   N  K  Y +
Sbjct: 75  RSKEPKIISSLSNNYKYSNYNNYNNYNKKLYYK 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,396
Number of Sequences: 438
Number of extensions: 2398
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)