Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0684
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46930.1 68415.m05862 pectinacetylesterase, putative similar ...    28   2.3  
At5g46650.1 68418.m05748 zinc finger (C3HC4-type RING finger) fa...    28   3.1  
At5g37130.1 68418.m04457 tetratricopeptide repeat (TPR)-containi...    28   3.1  
At5g17270.1 68418.m02023 tetratricopeptide repeat (TPR)-containi...    28   3.1  
At5g19480.1 68418.m02321 expressed protein                             27   4.1  
At4g39380.1 68417.m05574 expressed protein                             27   7.1  
At5g66710.1 68418.m08409 protein kinase, putative similar to pro...    26   9.4  

>At2g46930.1 68415.m05862 pectinacetylesterase, putative similar to
           pectinacetylesterase precursor GI:1431629 from [Vigna
           radiata]
          Length = 416

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 270 CPRIHRHFNSSQ*QRTRNFGKHSIDTAASTST 175
           C   H H NSSQ Q  ++F  H +D   S +T
Sbjct: 316 CKSDHSHCNSSQIQFFQDFRTHMVDAVKSFAT 347


>At5g46650.1 68418.m05748 zinc finger (C3HC4-type RING finger)
           family protein contains similarity to RING-H2 zinc
           finger protein ATL6 [Arabidopsis thaliana] GI:4928403;
           contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 289

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 266 HVSTGISTRHNNNELEILVNIASILQHPQVRVTHFKRQPL 147
           HV   ++ RHNNN+ E  ++   ++++ + R      Q L
Sbjct: 244 HVKIKVTRRHNNNQTESCISFGELVRNREGRFGEVSGQSL 283


>At5g37130.1 68418.m04457 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 856

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 218 FLVRCYCDELKCRWIRGQHK 277
           F++RC+CD L+ RW   +++
Sbjct: 399 FVLRCFCDLLRVRWESSRYR 418


>At5g17270.1 68418.m02023 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 899

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = +2

Query: 218 FLVRCYCDELKCRW--IRGQHK 277
           F++RC+CD L+ RW   RG+ K
Sbjct: 428 FVLRCFCDLLRVRWESTRGRTK 449


>At5g19480.1 68418.m02321 expressed protein
          Length = 207

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 122 KSRRNNRPKAHDQLNNNEKAKHRSTK 45
           K R+NN  +  D +  ++K+KH+S+K
Sbjct: 175 KKRKNNGTEDADDVQRHKKSKHKSSK 200


>At4g39380.1 68417.m05574 expressed protein 
          Length = 518

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 140 C**FTLKSRRNNRPKAHDQLNNNEKAKHRSTKRNPKK 30
           C  F+ + R    PK HDQ++   + + +  + NP K
Sbjct: 414 CHAFSFRKRTTITPKVHDQVSGEVEKEKQIDESNPAK 450


>At5g66710.1 68418.m08409 protein kinase, putative similar to
           protein kinase ATN1 GP|1054633 [Arabidopsis thaliana]
          Length = 405

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 334 IQPSLPI*TKLYKHITLELFMLSTYPPAFQL 242
           I+P L I T+L +  TL+ FMLS  P    L
Sbjct: 140 IEPKLMIITELMEGNTLQKFMLSVRPKPLDL 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,828,836
Number of Sequences: 28952
Number of extensions: 161654
Number of successful extensions: 341
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)