Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0683
         (405 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.1  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   6.1  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    20   8.0  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    20   8.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    20   8.0  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    20   8.0  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 66  VLAQALTDEQKENLKKHRADCLSE 137
           ++ Q + DE++++  KH A  L+E
Sbjct: 121 IVPQNVLDEEEKSSTKHYAALLTE 144


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 143 FRLGETVGSVFLQVLLLLICE 81
           ++L   VGS     L LLIC+
Sbjct: 3   YQLTACVGSAIAGFLFLLICD 23


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = +3

Query: 39  TFIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKT 191
           T++  V  ++L +  T  + + + ++  DC+ +     +   KLK G  +T
Sbjct: 15  TYVSSVEYLILREIDTILKNDQMTRNYLDCVLDKGKCTKEAEKLKKGITET 65


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/42 (21%), Positives = 19/42 (45%)
 Frame = -3

Query: 223 HRAYFFNGSFSVLKSPVFSLFTNCSSAFVSERQSALCFFKFS 98
           H  +  + +  +LK+P  S    C+ A        +C++ F+
Sbjct: 85  HLDFRNSATAELLKNPSLSSPDECARACREGEPPRICYYHFT 126


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/42 (21%), Positives = 19/42 (45%)
 Frame = -3

Query: 223 HRAYFFNGSFSVLKSPVFSLFTNCSSAFVSERQSALCFFKFS 98
           H  +  + +  +LK+P  S    C+ A        +C++ F+
Sbjct: 85  HLDFRNSATAELLKNPSLSSPDECARACREGEPPRICYYHFT 126


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +3

Query: 168 LKTGDFKTENEPLKKYALCMLIKSQLMTKTGNSRR 272
           LK  +F    E     ALC   + Q  +  GN  R
Sbjct: 18  LKNAEFNGLPEEKLLDALCQSFRKQNSSSCGNGNR 52


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,446
Number of Sequences: 336
Number of extensions: 1354
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)