Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0683
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    28   0.63 
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   1.5  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    26   2.6  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   2.6  
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    25   4.5  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   5.9  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   5.9  
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    24   7.8  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    24   7.8  

>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.9 bits (59), Expect = 0.63
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +3

Query: 27  CIMKTFIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFK 188
           C +  F+V  V V  A  LTDE+K  L K R +  S +   E+L  K     FK
Sbjct: 233 CAIVIFLVLPVSVETANFLTDEEK-TLAKMRIENDSSSAISEKLSFKQSLTVFK 285


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 30  IMKTFIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGD-FKTENEPL 206
           I+ TF++FVV ++L + L      ++ K+ +  + +    E    KL  GD F+    P+
Sbjct: 274 IIDTFLIFVVSIILYRTL----NRDINKYNSAFVDQEDVQEDFGWKLVHGDVFRPPRRPM 329


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 200 TIEEVCSMYADQITADDQDGKFKKDXALAKXPNAEDKLKVEK 325
           T +E+C    DQI  + +  +F+K+  L +  NA++KL+ E+
Sbjct: 314 TNQELC----DQIEINKKKLEFRKEQLLKQLSNAQEKLEHEQ 351


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 66  VLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYA 218
           V +  +TD    N+ +     L E   + + ++K KT DFK +   +  YA
Sbjct: 621 VASDKITDSSPGNMSEASESELEEVFKNPKELSKKKTTDFKDKEYYMSHYA 671


>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 349 LARQSVNQLLYFQFVFSIRXFSQSXVLLEFPVLVI 245
           L  + V QL   +FV S++   ++ V L FPV+V+
Sbjct: 296 LCSEVVCQLNVKEFVESVKQKQKNQVFLVFPVIVL 330


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 259 PVLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCS 149
           P +V+  DL++  +  + +    VL + +FSLF   S
Sbjct: 525 PCIVLLLDLLNSQKIIYLDDERVVLLNKIFSLFPRSS 561


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 110 LQVLLLLICEGLSQDNADDEHDKSLHDAL 24
           +QVL+L+     S+D   D + KSL+++L
Sbjct: 411 VQVLMLIFQASASRDFISDRYYKSLYESL 439


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 92  LICEGLSQDNADDEHDKSLHDALCL 18
           ++C G +    + E ++SLHDALC+
Sbjct: 376 ILCRGANLLTLE-EAERSLHDALCV 399


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 135 RRDSRLCVSSSSPSAHL 85
           R D  +C+SSSS  AHL
Sbjct: 208 RNDKSMCISSSSFIAHL 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,430,266
Number of Sequences: 5004
Number of extensions: 24402
Number of successful extensions: 96
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)