Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0683
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1283 - 27532143-27532517,27532602-27532906,27533053-275333... 31 0.35
10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234 29 1.4
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 27 5.6
12_02_0618 - 21262021-21262117,21262429-21262466,21262933-212629... 26 9.9
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408... 26 9.9
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 26 9.9
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 26 9.9
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65... 26 9.9
>12_02_1283 -
27532143-27532517,27532602-27532906,27533053-27533311,
27534412-27534618,27534726-27535181,27535866-27535963,
27536657-27536785,27537371-27537605,27538932-27539039,
27539110-27539160,27539261-27539445,27540207-27540274,
27541535-27541600,27541678-27541730,27542536-27542653,
27542743-27542844,27543525-27543682,27543763-27543840,
27543978-27544069,27544308-27544458
Length = 1097
Score = 31.1 bits (67), Expect = 0.35
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 227 ADQITADDQDGKFKKDXALAKXPNAEDKLKVEKLIDALPGQQKATXLTXT 376
+ Q T KFK++ L K P D L L+ ALP + L+ T
Sbjct: 637 SSQFTWQTDLKKFKRNPPLVKMPRVSDLLNTHPLVGALPAAMRDPLLSST 686
>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
Length = 856
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Frame = +2
Query: 35 EDFYR--VRRLRCLGSGPHR*AEGELEETQSR-LSLRDE 142
EDF+R ++RL+ LG P GE+EE ++R +S+RD+
Sbjct: 103 EDFFRKSIQRLKTLG--PRHNIAGEIEELKARVISVRDQ 139
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2
Query: 56 DEHDKSLHDALCL 18
DE D+SLHDALC+
Sbjct: 371 DEIDRSLHDALCI 383
>12_02_0618 -
21262021-21262117,21262429-21262466,21262933-21262986,
21263274-21263438,21263523-21263759,21263857-21263918,
21264543-21264656,21264816-21264942,21266200-21266218,
21266338-21266428,21266932-21267094,21267182-21267330,
21268147-21268287,21268368-21268533,21268568-21268631,
21268729-21269084,21269759-21269977,21270328-21270433,
21270713-21270942
Length = 865
Score = 26.2 bits (55), Expect = 9.9
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 109 FKFSFCSSVRA*AKTTQTTNTIKVFMMHSVWDPAR 5
F F F S V A A T TN +V + S P+R
Sbjct: 723 FAFKFASGVIAGALATALTNPTEVLKVRSQMSPSR 757
>07_01_0549 +
4082672-4082731,4083424-4083489,4083628-4083674,
4083757-4083802,4083905-4083985,4084105-4084147,
4084258-4084307,4084392-4084473,4084538-4084587,
4084687-4084760,4084870-4084921,4085034-4085459,
4085816-4086403
Length = 554
Score = 26.2 bits (55), Expect = 9.9
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +3
Query: 57 VCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIK 236
VC+V+ + E +KK ++ SE + LV L D+ N L + C I
Sbjct: 46 VCIVIGYCEGGDMSEAIKKANSNYFSEERLCMWLVQLLMALDYLHVNHILHRDVKCSNI- 104
Query: 237 SQLMTKTGNSR 269
+TK N R
Sbjct: 105 --FLTKDQNIR 113
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -2
Query: 92 LICEGLSQDNADDEHDKSLHDALCLGSSS 6
++ G S+ + DE ++SLHDALC+ S +
Sbjct: 343 IVLRGASE-HVLDEAERSLHDALCVLSQT 370
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -2
Query: 92 LICEGLSQDNADDEHDKSLHDALCLGSSS 6
++ G S+ + DE ++SLHDALC+ S +
Sbjct: 366 IVLRGASE-HVLDEAERSLHDALCVLSQT 393
>03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-653886,
654027-654247,654395-654533,654628-654710,654824-655036,
655099-655494,655587-655758,656085-656276,656363-656569,
656661-656753,656957-657156,657329-657838,658114-658184,
658322-658963,659057-659207,659425-659665
Length = 1360
Score = 26.2 bits (55), Expect = 9.9
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 66 VLAQALTDEQKENLKKHRADCLS--ETKADEQLVNKLKTGDFKTENE 200
+ + L + K++LK A T +L N+LKTG+ K NE
Sbjct: 910 ICSSGLDVDSKQSLKGDSAMTFQWLSTHMPPKLTNRLKTGNVKNNNE 956
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,182,719
Number of Sequences: 37544
Number of extensions: 156052
Number of successful extensions: 410
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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