Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0683
         (405 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.62 
SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)                 28   3.3  
SB_36274| Best HMM Match : SH2 (HMM E-Value=9.6e-05)                   27   4.4  
SB_24560| Best HMM Match : Ank (HMM E-Value=0)                         27   4.4  
SB_13527| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 207 SMVRFQS*SRLSSVCSPIVHQLSSRRDSRLCVSSSSPSAHL*GP 76
           S +  +S S  SSVC  ++H+LS+ R   +C S     A+   P
Sbjct: 430 SYIVCRSISYTSSVCRSVIHRLSANRSKTVCRSIGHTGAYTGAP 473


>SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)
          Length = 367

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 155 LFISFRLG--ETVGSVFLQVLLLLICEGLSQDNADDEHDK 42
           LF++F  G  E VG  F+     L CE    D  DD+H++
Sbjct: 305 LFLAFNRGYRELVGRAFIYTCCTL-CEIAEDDENDDDHER 343


>SB_36274| Best HMM Match : SH2 (HMM E-Value=9.6e-05)
          Length = 292

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 73 AKTTQTTNTIKVFMMHSVWDP 11
          A +TQTT T+K     SVW+P
Sbjct: 28 ASSTQTTATMKTLQSASVWNP 48


>SB_24560| Best HMM Match : Ank (HMM E-Value=0)
          Length = 248

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 110 LQVLLLLICEGLSQDNADDEHDKSLHDALCLGS 12
           ++V  LL+ +G + D  +D+ +  LH A C+GS
Sbjct: 64  MEVGRLLVEKGAALDKKNDKGETPLHMAACIGS 96


>SB_13527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 152 TIGEQTEDRRL*D*KRTIEEVCSMYADQITADDQDGKFKKD 274
           TI E  E  R+    R +   C    DQI+A + +G  +KD
Sbjct: 29  TIAESEESSRI----RDVRHQCRQIVDQISATEDEGGIQKD 65


>SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 889

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 183 SRLSSVCSPIVHQLSSRRDSRLCVSSSSPSAHL*GPEP 70
           SR S    P++ Q +SRRD+R CV +      +  P P
Sbjct: 418 SRRSFESLPLLQQPTSRRDARACVRAEDAFGIVHTPVP 455


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,588,961
Number of Sequences: 59808
Number of extensions: 181632
Number of successful extensions: 635
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)