Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0683
(405 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical ... 31 0.24
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 29 0.96
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 29 0.96
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 28 2.9
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 28 2.9
AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal tr... 28 2.9
AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical ... 28 2.9
AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation su... 28 2.9
AC006617-5|AAF39775.1| 325|Caenorhabditis elegans Serpentine re... 27 3.9
U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical pr... 27 5.1
U23171-2|AAC46704.2| 91|Caenorhabditis elegans Hypothetical pr... 27 6.8
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 27 6.8
AY519857-1|AAR89638.1| 444|Caenorhabditis elegans nematode poly... 26 9.0
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly... 26 9.0
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 26 9.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 26 9.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 26 9.0
AF106581-3|AAO25985.1| 399|Caenorhabditis elegans Nematode poly... 26 9.0
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly... 26 9.0
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly... 26 9.0
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei... 26 9.0
>AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical
protein C48E7.8 protein.
Length = 820
Score = 31.5 bits (68), Expect = 0.24
Identities = 28/109 (25%), Positives = 47/109 (43%)
Frame = -3
Query: 349 LARQSVNQLLYFQFVFSIRXFSQSXVLLEFPVLVISCDLISIHRAYFFNGSFSVLKSPVF 170
LA SVN+ + R + + V ++S + Y F S +K +
Sbjct: 276 LANSSVNRQFAPSIALTYRTLATISLSNSLLVNILSAFSVRSSLTYLFRNSTRDVK--LV 333
Query: 169 SLFTNCSSAFVSERQSALCFFKFSFCSSVRA*AKTTQTTNTIKVFMMHS 23
+LF CSS +V S C F F ++R+ A+ ++ + FMM+S
Sbjct: 334 NLFRVCSSFWVIF--SHTCLFSLHFTDTIRSVARKGESVVGWRNFMMNS 380
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 29.5 bits (63), Expect = 0.96
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 179 RL*D*KRTIEEVCSMYADQITADDQDGKFKKDXALAKXPNAEDKLKVEKL 328
+L D + T E V S+ D++ ++ K+K+D K + +L+ EK+
Sbjct: 699 QLMDSRNTDERVLSLCQDELVESQEEAKYKEDGLRGKIDGFKHELENEKM 748
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 29.5 bits (63), Expect = 0.96
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 179 RL*D*KRTIEEVCSMYADQITADDQDGKFKKDXALAKXPNAEDKLKVEKL 328
+L D + T E V S+ D++ ++ K+K+D K + +L+ EK+
Sbjct: 699 QLMDSRNTDERVLSLCQDELVESQEEAKYKEDGLRGKIDGFKHELENEKM 748
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 123 DCLSETKADEQLVNKLKTGDFKTENEPLK 209
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 390 DLVSELLAFKKKVDFIMTGSFKSANDPVK 418
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 123 DCLSETKADEQLVNKLKTGDFKTENEPLK 209
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 427 DLVSELLAFKKKVDFIMTGSFKSANDPVK 455
>AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal
triglyceride transferprotein protein.
Length = 892
Score = 27.9 bits (59), Expect = 2.9
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 45 IVFVVCVVLAQALTDEQKENLKKHRADCL-SETKADEQLVNKLKTGD-FKTEN 197
+ V V LA DE K+NL+KH D ++ K +E V LK F+TE+
Sbjct: 10 LAVTVGVCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62
>AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical
protein M4.1 protein.
Length = 554
Score = 27.9 bits (59), Expect = 2.9
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 57 VCVVLAQALTDEQKENLKKHRADCLSETKA--DEQLVNKLKTGDFKTENE 200
V + LTD Q++NLK ++ ++ET + L N + +G F E E
Sbjct: 330 VVTTYEEKLTDLQQKNLKLSKSCVINETASGLSRLLANSINSGSFIDEPE 379
>AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation
suppressor of clk-1protein 4 protein.
Length = 892
Score = 27.9 bits (59), Expect = 2.9
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 45 IVFVVCVVLAQALTDEQKENLKKHRADCL-SETKADEQLVNKLKTGD-FKTEN 197
+ V V LA DE K+NL+KH D ++ K +E V LK F+TE+
Sbjct: 10 LAVTVGVCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62
>AC006617-5|AAF39775.1| 325|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 65 protein.
Length = 325
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 259 PVLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCSSAFVS 134
P ++S L S +N + +VLK+ + L+ +C++ FVS
Sbjct: 14 PFYLLSLCLFSTMYILIYNFTTNVLKAMRYFLYASCTATFVS 55
>U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical
protein T05B11.4 protein.
Length = 476
Score = 27.1 bits (57), Expect = 5.1
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 241 CDLISIHRAYFFNGSFSVLKSPVFSLFTNCSSAFVSERQSALCFFKFS 98
C L+ + R Y F +L VF +FTN F S R S C+ + S
Sbjct: 16 CSLVEMQRIYQFILIIILLLLLVFDIFTNKPELFPSSRISP-CYTESS 62
>U23171-2|AAC46704.2| 91|Caenorhabditis elegans Hypothetical
protein K02A2.5 protein.
Length = 91
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 224 YADQITADDQDGKFKKDXALAKXPNAEDKLKVEKLIDAL 340
Y D+ A D D F+K AL + + LIDAL
Sbjct: 45 YDDKADAHDADAAFRKFEALCSARSQQPSTSKPSLIDAL 83
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 245 DDQDGKFKKDXALAKXPNAEDKLKVEKLIDALPGQQ 352
D + ++ K K PN + K K+EK +DAL +Q
Sbjct: 566 DGRQKQYGKKSMGPKPPNGKPKEKIEKKLDALSIEQ 601
>AY519857-1|AAR89638.1| 444|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (51.7 kD) protein.
Length = 444
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 203 IEEVCSMYADQITADDQDGKFKKDXALAKXPNAEDKLKVEKL----IDALPGQQK 355
++E C Y+ + +++ +FK K NAE ++EKL ID + +QK
Sbjct: 355 LKEACKEYSVKAFGEEKVAQFKAQYKKLKDENAEQS-EIEKLSNQYIDEIEDEQK 408
>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (164.6 kD) protein.
Length = 1440
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 203 IEEVCSMYADQITADDQDGKFKKDXALAKXPNAEDKLKVEKL----IDALPGQQK 355
++E C Y+ + +++ +FK K NAE ++EKL ID + +QK
Sbjct: 1351 LKEACKEYSVKAFGEEKVAQFKAQYKKLKDENAEQS-EIEKLSNQYIDEIEDEQK 1404
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 72 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ 242
A A ++K++ KH AD + + D++L + K +++ LKK A L K +
Sbjct: 7269 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKEK 7325
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 72 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ 242
A A ++K++ KH AD + + D++L + K +++ LKK A L K +
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKEK 7345
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 72 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ 242
A A ++K++ KH AD + + D++L + K +++ LKK A L K +
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKEK 7345
>AF106581-3|AAO25985.1| 399|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform b
protein.
Length = 399
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 203 IEEVCSMYADQITADDQDGKFKKDXALAKXPNAEDKLKVEKL----IDALPGQQK 355
++E C Y+ + +++ +FK K NAE ++EKL ID + +QK
Sbjct: 310 LKEACKEYSVKAFGEEKVAQFKAQYKKLKDENAEQS-EIEKLSNQYIDEIEDEQK 363
>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform c protein.
Length = 1198
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 203 IEEVCSMYADQITADDQDGKFKKDXALAKXPNAEDKLKVEKL----IDALPGQQK 355
++E C Y+ + +++ +FK K NAE ++EKL ID + +QK
Sbjct: 1109 LKEACKEYSVKAFGEEKVAQFKAQYKKLKDENAEQS-EIEKLSNQYIDEIEDEQK 1162
>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform a protein.
Length = 1440
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 203 IEEVCSMYADQITADDQDGKFKKDXALAKXPNAEDKLKVEKL----IDALPGQQK 355
++E C Y+ + +++ +FK K NAE ++EKL ID + +QK
Sbjct: 1351 LKEACKEYSVKAFGEEKVAQFKAQYKKLKDENAEQS-EIEKLSNQYIDEIEDEQK 1404
>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
protein.
Length = 1198
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 203 IEEVCSMYADQITADDQDGKFKKDXALAKXPNAEDKLKVEKL----IDALPGQQK 355
++E C Y+ + +++ +FK K NAE ++EKL ID + +QK
Sbjct: 1109 LKEACKEYSVKAFGEEKVAQFKAQYKKLKDENAEQS-EIEKLSNQYIDEIEDEQK 1162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,023,389
Number of Sequences: 27780
Number of extensions: 142044
Number of successful extensions: 680
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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