Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0683
         (405 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19900.1 68416.m02520 expressed protein                             29   0.89 
At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr...    28   2.7  
At5g31412.1 68418.m03722 hypothetical protein contains Pfam doma...    27   4.8  
At3g03440.1 68416.m00342 armadillo/beta-catenin repeat family pr...    27   4.8  
At2g36200.1 68415.m04444 kinesin motor protein-related                 27   6.3  
At4g39420.1 68417.m05579 expressed protein  ; expression support...    26   8.3  
At1g65010.1 68414.m07368 expressed protein similar to endosome-a...    26   8.3  

>At3g19900.1 68416.m02520 expressed protein
          Length = 222

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 173 LQFVHQLFISFRLGETVGSVFLQVLLLLICEGLSQDNADDEHDKSLHD 30
           L F H L +    G+T    F ++  ++  EG + DN+DDE  +SL D
Sbjct: 42  LAFSHSLCLKTTYGKTDRRKFSRICSIVDDEG-NLDNSDDEEKESLDD 88


>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
           protein precursor - Plasmodium falciparum, PIR2:A54514
          Length = 504

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +3

Query: 87  DEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKTGNS 266
           D  K  +K+H   CL+  + DE   N L+T + K +  P+K+ A   L K     K G  
Sbjct: 77  DVHKSFVKQHLVQCLAGAENDETSENSLET-EKKDDVTPVKEAA--ELSKEHTTKKDGKE 133

Query: 267 RRT 275
             T
Sbjct: 134 DMT 136


>At5g31412.1 68418.m03722 hypothetical protein contains Pfam domain,
           PF04937: Protein of unknown function (DUF 659)
          Length = 433

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 114 HRADCLSETKADEQLVNKLKT-GDFKTENEPLKKYALCML 230
           H  D + E  +    + K++T GD+K EN  L +Y  C+L
Sbjct: 227 HTVDLMLEAISKLPKMGKMQTFGDYKGENLFLNRYESCVL 266


>At3g03440.1 68416.m00342 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 408

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 200 TIEEVCSMYADQITADDQDGKFKKDXALAKXPNAEDKLK 316
           TIE + S     I  DDQ GK KK  A     + E  L+
Sbjct: 358 TIENIVSSLISHIDGDDQSGKAKKMLAEMVQVSMEKSLR 396


>At2g36200.1 68415.m04444 kinesin motor protein-related 
          Length = 1056

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 75  QALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPL 206
           Q    EQ  NL    A CLS+     Q VNKL     +  N+ +
Sbjct: 542 QVELSEQISNLFNRVASCLSQQNVHLQGVNKLSQSRLEAHNKAI 585


>At4g39420.1 68417.m05579 expressed protein  ; expression supported
           by MPSS
          Length = 781

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 137 LGETVGSVFLQVLLLLICEGLS 72
           +GE+VG  F   L L+ C+GLS
Sbjct: 675 IGESVGCSFQGFLFLVTCDGLS 696


>At1g65010.1 68414.m07368 expressed protein similar to
           endosome-associated protein (GI:1016368) [Homo sapiens];
           similar to Centromeric protein E (CENP-E protein)
           (Swiss-Prot:Q02224) [Homo sapiens]
          Length = 1318

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 87  DEQKENLKKHRADCLSETKADEQLVNK 167
           DEQ E LKK +A  + + K  E+LV +
Sbjct: 71  DEQIELLKKDKAKAIDDLKESEKLVEE 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,552,098
Number of Sequences: 28952
Number of extensions: 132675
Number of successful extensions: 412
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)