Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0676
         (413 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   0.51 
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   2.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   4.8  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 24.2 bits (50), Expect = 0.51
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 127 PHGSTFRLGADSGRFSQCCSRPPCEQR 207
           P+G T   G D G +   CS  PCE +
Sbjct: 88  PYGYT---GKDCGEYVDWCSTNPCENQ 111


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 99  LITKLSVLVASWINISAWG*LRKIFSVL 182
           ++  LSV+ +S+++I+ W  L K F  +
Sbjct: 484 VLNLLSVIKSSFLDINTWKMLVKSFDAI 511


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 342  GPATSWLKANTRRRKI 389
            GP+ +W   NT+  KI
Sbjct: 1141 GPSDTWFDENTKDTKI 1156


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,192
Number of Sequences: 336
Number of extensions: 1894
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9068614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)