Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0676
         (413 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)                 30   0.66 
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)                 28   2.6  
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)                 27   6.1  
SB_47705| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         27   8.1  
SB_27375| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.3e-07)         27   8.1  
SB_18883| Best HMM Match : DUF734 (HMM E-Value=8.4)                    27   8.1  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
          Length = 185

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +1

Query: 271 DKDKFQV-NLDVQHFAPEEISVK 336
           D DKFQ+  LDV+ F PEEI+ K
Sbjct: 2   DADKFQIATLDVREFKPEEITCK 24



 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 271 DKDKFQVNLDVQHFAPEEISVK 336
           D  KF + LDV  F PEE+ VK
Sbjct: 96  DDTKFTLALDVSDFKPEEVDVK 117


>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
          Length = 259

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 271 DKDKFQVNLDVQHFAPEEISVK 336
           D  KF + LDV  F PEE+ VK
Sbjct: 24  DDTKFTLALDVSDFKPEEVDVK 45


>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
          Length = 189

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 265 KSDKDKFQVNLDVQHFAPEEISVK 336
           K+ +DKF + +DV  F PE I V+
Sbjct: 92  KAKEDKFSMAIDVAGFPPESIKVQ 115


>SB_47705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 410 PRYVTMLDLSSPRVCLQPRCSRSAVLTEISSGAKCW 303
           P +V    L+S  V    +  RSA+ T +S+ +K W
Sbjct: 166 PHHVPEYQLASSHVEKSSQAQRSAIYTHVSAPSKVW 201


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 90   RGYLITKLSVLVASWINISA 149
            RG L T+ S+ +A+WIN+ A
Sbjct: 2837 RGRLDTRRSITIAAWINVRA 2856


>SB_27375| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.3e-07)
          Length = 240

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 262 IKSDKDKFQVNLDVQHFAPEEISVKTADRLHRG 360
           +K DK K+Q N D  HF P+EI V     L+ G
Sbjct: 131 LKWDKAKYQ-NRDRVHFDPKEIWVPDISLLNNG 162


>SB_18883| Best HMM Match : DUF734 (HMM E-Value=8.4)
          Length = 204

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 338 RRTGYIVVEGKHEEKKDQAWL-HIAV 412
           RRTGY VV+G+       AW+ H+ V
Sbjct: 146 RRTGYHVVDGEDHTSGSHAWITHLDV 171


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 60   KSTTTKCR*FRGYLITKLSVLVASWINISAW 152
            K + T+ R   G LI K++   A WI+ S W
Sbjct: 3233 KGSATQARGSLGQLINKMNKPPAKWISASMW 3263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,114,837
Number of Sequences: 59808
Number of extensions: 229378
Number of successful extensions: 619
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)