Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0674
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0312 - 7326092-7326148,7326415-7326540,7327744-7327821,732... 32 0.23
06_01_0508 - 3674787-3675140,3675257-3675566,3675672-3675806,367... 31 0.31
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 29 1.6
05_05_0292 + 23889536-23889568,23889753-23889828,23889932-238899... 28 2.9
03_01_0461 - 3543554-3543781,3544287-3544367,3544481-3544714,354... 28 2.9
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498... 28 3.8
06_03_1027 + 27000498-27000503,27001325-27002271,27002359-27002698 27 5.0
11_06_0124 + 20348269-20348413,20348753-20348874,20349210-203493... 27 8.7
07_01_1152 - 10837540-10839549 27 8.7
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 27 8.7
>03_02_0312 -
7326092-7326148,7326415-7326540,7327744-7327821,
7327916-7328178,7328699-7328741,7329581-7329632,
7329705-7329871,7330135-7330194,7330291-7330374,
7330654-7330758,7330840-7330899,7330976-7331032
Length = 383
Score = 31.9 bits (69), Expect = 0.23
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 94 STDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSFADARTQD 255
S N V +N+ + S ++G+ H SG+ S SSTNS + +RT+D
Sbjct: 148 SLGNLDVVATKNKKAPAKPSASSSNEGSSHSESGSGSSSEGSSTNSKSGSRTKD 201
>06_01_0508 -
3674787-3675140,3675257-3675566,3675672-3675806,
3675891-3676100,3676193-3677359,3677397-3677587
Length = 788
Score = 31.5 bits (68), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 103 NSAVGVVENQPSVTTDSTRKQSQGNVHP 186
N + GVVEN+P + TD Q G VHP
Sbjct: 349 NVSPGVVENEPGMKTDVLTTQGLGLVHP 376
>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 22 CIYLGTMSDILEDDLEFRGGTLQLSTDNSA-VGVVENQPSVTTD 150
CIY + + DDL G ++L+T NS+ V VE SV D
Sbjct: 1279 CIYCYQQIETISDDLLELGYAIELATGNSSIVSKVEGSSSVLKD 1322
>05_05_0292 +
23889536-23889568,23889753-23889828,23889932-23889996,
23890235-23890294,23890391-23890473,23890584-23890688,
23890942-23891566,23892008-23892198,23892292-23892400,
23892602-23892750,23892810-23892824,23893139-23893365,
23893464-23893477
Length = 583
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 82 TLQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSFADARTQDSR 261
TL D++A + +++PS + DST S N+ S S + + S+ F + + R
Sbjct: 172 TLNKPVDSNA-DIFQHKPSSSLDSTSSLSSSNLDASFSSRTRTASGSSAIFQKSSLKSIR 230
Query: 262 MPQDYLQQSL 291
P Q+ L
Sbjct: 231 KPYMPTQRKL 240
>03_01_0461 -
3543554-3543781,3544287-3544367,3544481-3544714,
3545335-3545415,3545456-3545538,3546445-3546604,
3546903-3547028
Length = 330
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 255 VLCSSICKRISR*CQRICTGENRRMHIAL 169
V C +IC S C R+CT E R I L
Sbjct: 104 VKCYAICTEASTNCHRLCTLEKRVKEIVL 132
>04_04_0468 - 25447774-25447945,25449016-25449130,25449541-25449877,
25450299-25450628,25451090-25451362,25451471-25451929,
25452307-25452516,25452617-25452828,25453304-25453404,
25453584-25454008,25454167-25454360,25454436-25454701,
25454809-25455015,25455121-25455281,25455741-25455933,
25456158-25456251,25457238-25457373,25458074-25458202,
25458315-25458449,25458549-25458613,25459875-25459950,
25460775-25460885,25461194-25461371,25462340-25462434
Length = 1557
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 124 ENQPSVTTDSTRKQSQGNVHPSVL--SGADSLTSSTNSFADARTQDSRMPQDYLQQSLRR 297
EN P T+++ +S H ++ SG + + N+ TQ R+P + ++S ++
Sbjct: 1401 ENIPFQNTETSFTRSS-KFHNQIIAGSGKHDVNNGRNNQPKLATQSGRLPSEATEKSNKK 1459
Query: 298 YTLGMMCHSIRR 333
G M H R
Sbjct: 1460 VYHGDMVHKTAR 1471
>06_03_1027 + 27000498-27000503,27001325-27002271,27002359-27002698
Length = 430
Score = 27.5 bits (58), Expect = 5.0
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +1
Query: 64 LEFRGGTLQLSTDNSAVGVVENQPSVTTDSTRKQSQG---NVHPSVLSGADSLTSSTNSF 234
+ F GG++ +S DNS+VG E++ + + +VH SV+ ++ + N
Sbjct: 61 MNFVGGSVAMSVDNSSVGSNESRTVMLKHPGLRDMPAPSYSVHNSVIHPNRAMAPTLNED 120
Query: 235 ADART-QDSRMPQDYL 279
A AR D P + L
Sbjct: 121 ALARVLMDPSHPTEIL 136
>11_06_0124 +
20348269-20348413,20348753-20348874,20349210-20349318,
20349401-20349440,20350245-20350334,20350388-20350547,
20350656-20350795,20351390-20351492,20351667-20352178,
20352267-20352543
Length = 565
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 142 TTDSTRKQSQGNVHPSVLSGADSLTSSTNSFADARTQDSRMPQDYLQQSLRRYT 303
TTDS + N HP+ L DS + ++++ + + +D L +RYT
Sbjct: 451 TTDSRNSHNIPNEHPATLPPRDS-RETQHTYSLSNENVNHREKDALDSDSQRYT 503
>07_01_1152 - 10837540-10839549
Length = 669
Score = 26.6 bits (56), Expect = 8.7
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = +1
Query: 31 LGTMSDILEDDLEFRGGTLQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADS 210
+GTM L +L R G STD A G+ + + +K SQGN H S D
Sbjct: 511 VGTMG-YLAPEL-VRTGRASTSTDVFAFGIFLLEVTCGQRPIKKDSQGNQH----SLFDW 564
Query: 211 LTSSTNSFADARTQDSRMPQDY-LQQSLRRYTLGMMC 318
+ ++ + DSR+ D+ + + LG++C
Sbjct: 565 VLQFLHNSSLIEAMDSRLQADFNIDEVCLVLKLGLLC 601
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +1
Query: 103 NSAVGVVENQPSV---TTDSTRKQSQGNVHPSVLSGADSLTSSTNS 231
+S V V+ N P + +T+ + +SQ N H ++ + + STN+
Sbjct: 636 SSEVSVIHNNPGLAQCSTEGSCTESQKNQHQDFVTTSGDIAGSTNN 681
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,061,590
Number of Sequences: 37544
Number of extensions: 240539
Number of successful extensions: 597
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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