Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0674
(436 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022) 32 0.18
SB_40832| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_33706| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 28 3.8
SB_8284| Best HMM Match : C1_3 (HMM E-Value=0.38) 28 3.8
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7) 28 3.8
SB_37148| Best HMM Match : TPR_1 (HMM E-Value=0) 27 6.7
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_54198| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_48151| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_20102| Best HMM Match : FYVE (HMM E-Value=3.8e-08) 27 8.8
>SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)
Length = 664
Score = 32.3 bits (70), Expect = 0.18
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 88 QLSTDNSAVGVVENQPSVTTDSTRKQSQGN 177
QL ++NS G VEN+ T D T+K+S+ N
Sbjct: 400 QLDSENSNTGNVENEKKGTKDKTKKKSKNN 429
>SB_40832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1496
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 258 QNASGLSPTESQTVYPR-YDVPFNKENIKD 344
Q SG + +QTV P YDVP KEN+ D
Sbjct: 1384 QLKSGFTQIRAQTVEPGFYDVPREKENVSD 1413
>SB_33706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 969
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 327 KENIKDFFTFRKGVVEAXIQECITILLFPEDGEYL 431
+E K +F+ R+G E+ ++EC IL +DG+ +
Sbjct: 593 REQAKKYFSLREGQFESALEECKKILHPEKDGKII 627
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 28.7 bits (61), Expect = 2.2
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +3
Query: 84 ASTFNRQFCGRCC 122
AS F+RQ+CG+CC
Sbjct: 133 ASHFDRQYCGKCC 145
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 97 LKVEAYRPETRDHLLKYRSLYPN 29
+K+ AY + R+HL+K R+ PN
Sbjct: 1331 MKIRAYMTKVREHLMKLRADLPN 1353
>SB_8284| Best HMM Match : C1_3 (HMM E-Value=0.38)
Length = 523
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 300 YPRYDVPFNKENIKDFFTFRKG 365
YPRY PFN+ ++ F KG
Sbjct: 54 YPRYSDPFNRSFVRPKMAFNKG 75
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 300 YPRYDVPFNKENIKDFFTFRKG 365
YPRY PFN+ ++ F KG
Sbjct: 100 YPRYSDPFNRSFVRPKMAFNKG 121
>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
Length = 521
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 97 TDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSFADARTQDS 258
+DNS+ G + S + +ST S + S S +D+ ++S NS+ D T D+
Sbjct: 190 SDNSSSGNFNSDNSTSDNSTSDNSNSDNSTSDNSTSDN-SNSDNSYTDNSTSDN 242
>SB_37148| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1073
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 94 STDNSAVGVVENQPSVTTDSTRKQSQG 174
STD+ A G +NQP + T + Q G
Sbjct: 713 STDSKATGGTQNQPQLPTQAPMSQGTG 739
>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2835
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 216 CQRICTGENRRM-HIALGLFSCRICRDTGLIFNN 118
C+ IC+G + H+AL L C IC D +F N
Sbjct: 945 CKPICSGRLMEVKHLAL-LSKCAICSDMDKLFFN 977
>SB_54198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 26.6 bits (56), Expect = 8.8
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +2
Query: 65 SSFGAVRFNFQPTILR*VLLKISPVSRQILQE-----NSPRAMCILLFSPV 202
SS A F P +L+ ISP+ +QI Q+ N PR CI P+
Sbjct: 16 SSKAAGPDGFHPRVLKECAPVISPILKQIFQKPLDAGNLPREWCIANVCPI 66
>SB_48151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -1
Query: 130 DFQQHLPQNCRLKVEAYRPETRDHLLKYRSLYPNIYTK 17
+F + + +C+L+ AY E + H+ + Y N + K
Sbjct: 173 EFNEWIDGSCKLRYSAYSREAQAHISGWAMKYTNNHNK 210
>SB_20102| Best HMM Match : FYVE (HMM E-Value=3.8e-08)
Length = 910
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 181 HPSVLSGADSLTSSTNSFADARTQDS 258
HP L GADS +S T+ + A + DS
Sbjct: 677 HPITLEGADSSSSITSPISPAPSDDS 702
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,419,725
Number of Sequences: 59808
Number of extensions: 305901
Number of successful extensions: 872
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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