Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0674
(436 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p... 30 0.83
Z92833-3|CAB07378.1| 506|Caenorhabditis elegans Hypothetical pr... 29 1.1
U51163-1|AAA96319.1| 506|Caenorhabditis elegans fork head/HNF-3... 29 1.1
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 29 1.1
Z92834-11|CAB07388.2| 594|Caenorhabditis elegans Hypothetical p... 28 3.4
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p... 27 5.9
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 27 5.9
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ... 27 5.9
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ... 27 5.9
>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
protein C34D4.14 protein.
Length = 2761
Score = 29.9 bits (64), Expect = 0.83
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 124 ENQPSVTTD-STRKQSQGNVHPSVLSGADSLTSSTNSFADARTQDSRMPQDYLQQSLRR 297
ENQPS +T T PS GAD+ ++S S + +S P QQS+ +
Sbjct: 689 ENQPSSSTAVPTANDIMDTTVPSSSGGADAESNSNPSTIEMADPESSTPSSSTQQSISK 747
>Z92833-3|CAB07378.1| 506|Caenorhabditis elegans Hypothetical
protein F38A6.1a protein.
Length = 506
Score = 29.5 bits (63), Expect = 1.1
Identities = 24/82 (29%), Positives = 35/82 (42%)
Frame = +1
Query: 55 EDDLEFRGGTLQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSF 234
E D E T STD+ EN+ + T+ RK+ Q H + +G S TS T +
Sbjct: 23 EPDSEAEPATTTNSTDSEDSVEQENKKLLETEKNRKREQ--KHKMLPNGTTSGTSDTGNQ 80
Query: 235 ADARTQDSRMPQDYLQQSLRRY 300
A T + DY + + Y
Sbjct: 81 VPA-TSSAASSVDYTAMNAQDY 101
>U51163-1|AAA96319.1| 506|Caenorhabditis elegans fork
head/HNF-3-like protein protein.
Length = 506
Score = 29.5 bits (63), Expect = 1.1
Identities = 24/82 (29%), Positives = 35/82 (42%)
Frame = +1
Query: 55 EDDLEFRGGTLQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSF 234
E D E T STD+ EN+ + T+ RK+ Q H + +G S TS T +
Sbjct: 23 EPDSEAEPATTTNSTDSEDSVEQENKKLLETEKNRKREQ--KHKMLPNGTTSGTSDTGNQ 80
Query: 235 ADARTQDSRMPQDYLQQSLRRY 300
A T + DY + + Y
Sbjct: 81 VPA-TSSAASSVDYTAMNAQDY 101
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 29.5 bits (63), Expect = 1.1
Identities = 26/89 (29%), Positives = 37/89 (41%)
Frame = +1
Query: 91 LSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSFADARTQDSRMPQ 270
LST + + G + S T ST S S +SGA +++ ST S + T S +
Sbjct: 800 LSTISGSTGSTVSGSSDMTVSTGSTSSPGSTESTVSGASTMSPSTGSSVETSTSGSSV-- 857
Query: 271 DYLQQSLRRYTLGMMCHSIRRI*KTSSHS 357
+ QS T G S + SS S
Sbjct: 858 STVSQSTSSSTTGQSTVSESSVSTVSSES 886
>Z92834-11|CAB07388.2| 594|Caenorhabditis elegans Hypothetical
protein F39B2.8 protein.
Length = 594
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +1
Query: 172 GNVHPSVLSGADSLTSSTNSFADARTQDSRMPQDYLQQSLRRYTLGMMCHSIRRI*KTSS 351
G HPS+ D++ + T FA+ D P+D ++ L+R + + ++ + + +
Sbjct: 465 GRAHPSLAKLRDNILNGTIDFAEVPIADMN-PED-IRAELKRVYTQLRMYKLKNLYQDNP 522
Query: 352 HSEK 363
H K
Sbjct: 523 HISK 526
>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 79 GTLQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTN 228
GT++ + D A G + N+P+ T+ +K + + S +S D ++ TN
Sbjct: 1149 GTMEDAQDKGASGNIPNRPAAGTEPVQKPTSDYIAGSSMS-IDDMSYITN 1197
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +1
Query: 82 TLQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTNSFADART 249
T Q + + EN PS + +Q P + SGA S +SST S + T
Sbjct: 922 TSQSTPSATLTSTTENIPSTSKIPETSTTQRPTSPILTSGATSTSSSTESTTTSPT 977
>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 79 GTLQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTN 228
GT++ + D A G + N+P+ T+ +K + + S +S D ++ TN
Sbjct: 1149 GTMEDAQDKGASGNIPNRPAAGTEPVQKPTSDYIAGSSMS-IDDMSYITN 1197
>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 79 GTLQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSSTN 228
GT++ + D A G + N+P+ T+ +K + + S +S D ++ TN
Sbjct: 1149 GTMEDAQDKGASGNIPNRPAAGTEPVQKPTSDYIAGSSMS-IDDMSYITN 1197
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,712,390
Number of Sequences: 27780
Number of extensions: 227297
Number of successful extensions: 730
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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