Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0674
         (436 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16680.1 68418.m01951 PHD finger family protein contains Pfam...    38   0.003
At3g47750.1 68416.m05202 ABC transporter family protein probable...    31   0.44 
At2g32460.1 68415.m03965 myb family transcription factor (MYB101...    29   1.4  
At4g01230.1 68417.m00162 reticulon family protein (RTNLB7) weak ...    27   4.1  
At3g44020.1 68416.m04713 thylakoid lumenal P17.1 protein contain...    27   4.1  
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ...    27   4.1  
At3g47760.1 68416.m05203 ABC transporter family protein probable...    27   5.5  
At5g65500.1 68418.m08240 protein kinase family protein contains ...    27   7.2  
At3g27740.1 68416.m03463 carbamoyl-phosphate synthase [glutamine...    27   7.2  
At1g09020.1 68414.m01006 protein kinase, putative similar to pro...    26   9.5  

>At5g16680.1 68418.m01951 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 1290

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 22/72 (30%), Positives = 36/72 (50%)
 Frame = +1

Query: 43  SDILEDDLEFRGGTLQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSLTSS 222
           S  +  ++ F G  L  S+D +  GVV +Q SV  D     S  N H S+ + A   ++ 
Sbjct: 32  SSCMHRNVGFTGSKLDESSDENCHGVVGSQCSVNEDDLLPSSMVNAHKSLNNTASEASNL 91

Query: 223 TNSFADARTQDS 258
            NS  DA ++++
Sbjct: 92  VNSSHDALSENA 103


>At3g47750.1 68416.m05202 ABC transporter family protein probable
           transport protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 944

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = -3

Query: 416 LRKQQNGNTFLYXCFYNTFSECEEVFYILLIEWHI 312
           L++Q NG+  +   +++  S  +EVFYI++IEW +
Sbjct: 516 LKRQLNGSDGMKWKYFSD-SAMDEVFYIIIIEWFL 549


>At2g32460.1 68415.m03965 myb family transcription factor (MYB101)
           identical to putative transcription factor MYB101
           GI:18087348 from [Arabidopsis thaliana]
          Length = 490

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +1

Query: 43  SDILEDDLEFRGGTLQLSTDNSAVGVVENQPSVTTDSTRKQSQGNVHPSVLSGADSL 213
           S +L  DLE R  +  L  DNS + +  NQ    + S+       VH    SG   L
Sbjct: 276 SSLLMGDLEIRSSSFPLGLDNSVLELPSNQRPTHSFSSSPIIDNGVHLEPPSGNSGL 332


>At4g01230.1 68417.m00162 reticulon family protein (RTNLB7) weak
           similarity to SP|O95197 Reticulon protein 3
           (Neuroendocrine-specific protein-like) {Homo sapiens};
           contains Pfam profile PF02453: Reticulon
          Length = 242

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 172 GNVHPSVLSGADSLTSSTNSFADARTQDSRMP 267
           GN+ P  ++G DSLTSS    +D+   DS +P
Sbjct: 18  GNIVPEEINGLDSLTSSD---SDSEKPDSPVP 46


>At3g44020.1 68416.m04713 thylakoid lumenal P17.1 protein contains
           Pfam PF00684 : DnaJ central domain (4 repeats);
           SP:Q9LXV9; PMID:11719511; supported by EST AI997589.
          Length = 159

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 186 RMHIALGLFSCRICRDTGLIF 124
           +M +  G+  C++C+ +GLIF
Sbjct: 126 KMKVESGMVDCKVCKGSGLIF 146


>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 96  NRQFCGRCC*KSAQCHDRFYKKTVPGQCASFCSLRC--RFFD 215
           +R FC  C     +C      K + G C SFC+LRC   +FD
Sbjct: 605 SRLFCYTC---ELRCGQTLVFKYIGG-CKSFCTLRCIGNYFD 642


>At3g47760.1 68416.m05203 ABC transporter family protein probable
           transport protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 872

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 359 SECEEVFYILLIEWHI 312
           S  EE+FYI+++EW +
Sbjct: 468 SAMEEIFYIIIVEWFV 483


>At5g65500.1 68418.m08240 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 765

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/67 (20%), Positives = 31/67 (46%)
 Frame = -2

Query: 402 KW*YIPVXLLLQHLF*M*RSLLYSPY*MAHHTEGIPSETLLEIILRHSAVLCSSICKRIS 223
           KW  IP+ ++L HL  + +  +Y+P+          SE  L+++ ++       +  +  
Sbjct: 43  KWNNIPISIVLLHLCNISQDFVYTPF--GKLPASSVSEEKLQVLRKYEDQKIDKLLSKYI 100

Query: 222 R*CQRIC 202
             C ++C
Sbjct: 101 TFCGKVC 107


>At3g27740.1 68416.m03463 carbamoyl-phosphate synthase
           [glutamine-hydrolyzing] (CARA) / glutamine-dependent
           carbamoyl-phosphate synthase small subunit identical to
           carbamoyl phosphate synthetase small subunit GI:2462781
           [Arabidopsis thaliana]
          Length = 430

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 61  DLEFRGGTLQLSTDNSAVGVVENQPSVTTDSTRKQSQ 171
           DL+ R  T +L  D S +GV+  + S T D   + S+
Sbjct: 165 DLDTRAITRRLREDGSLIGVLSTEQSKTDDELLQMSR 201


>At1g09020.1 68414.m01006 protein kinase, putative similar to
           protein kinase AKINbetagamma-2 [Zea mays] GI:11139548,
           AKINbetagamma-1 [Zea mays] GI:11139546; contains Pfam
           profile PF00571: CBS domain
          Length = 487

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 266 LRIISNRVSDGIPSV*CAIQ*GEYKRLLHI 355
           L+I+ N+V+  +P +  ++Q G Y +LLH+
Sbjct: 278 LKILQNKVA-AVPVIYSSLQDGSYPQLLHL 306


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,854,492
Number of Sequences: 28952
Number of extensions: 200567
Number of successful extensions: 529
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)