Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0673
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.14c |||adenosine 5'-monophosphoramidase|Schizosaccharom...    35   0.004
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         33   0.024
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    27   1.6  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   3.6  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   3.6  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    24   8.4  

>SPCC1442.14c |||adenosine
           5'-monophosphoramidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 133

 Score = 35.1 bits (77), Expect = 0.004
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 49  IFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQL-SLADDTDEQLL 219
           IF KI++ +IP   + E    +AF D+ P +  H LVIP++   ++  L+D++   +L
Sbjct: 4   IFCKIVKGDIPCVKLAETALSLAFLDIAPTSKGHALVIPKEHAAKMHELSDESCADIL 61


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 32.7 bits (71), Expect = 0.024
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 76  IPANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGHLLIVARKV 249
           + +   Y  +   AF ++ P  P HVLVIP++ +P+L    D     L  L    RKV
Sbjct: 12  VGSQVFYRTKLSAAFVNLKPILPGHVLVIPQRAVPRLK---DLTPSELTDLFTSVRKV 66



 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 291 VNDGKNGAQSVYHLHIHILGGRQMQWPPG*IIXYSXLK 404
           + DG +  Q+V H+H+HI+  ++  +    ++ YS L+
Sbjct: 83  IQDGVDAGQTVPHVHVHIIPRKKADFSENDLV-YSELE 119


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 239 PVKLLPARPGQDRLPPSC*RWKEWRPKR 322
           PV  L  RP  D       RWK WR  R
Sbjct: 345 PVFSLDVRPAVDSFESVALRWKHWRAMR 372


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = -2

Query: 276 LSCPGLAGSNFTGNN*KMS*QLFISVISQRELWNRLPWYHQYMSRSLWVHIIERYALFV 100
           L   GLA   +T ++     Q +I +++  +  N +P Y QY+S  +      R+ + V
Sbjct: 448 LKISGLAVDEYTSDS---IIQAYIELLASAKKVNLVPLYIQYLSNQVQYEAYSRFLILV 503


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 169 SLVSPIHE*ELVGSHH*TLRIVRLRK*NLQGFLYVIFSQRLYHRLERQFVQV 14
           +LV  I+   LV  HH       +R   LQ  LY+   +RLY   + ++V+V
Sbjct: 149 TLVYDIYTLCLVSWHHHVFS--HIRDSLLQNLLYMFTKKRLYEPTDMKYVEV 198


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 255 QLGLDKTGFRLVVNDGKNGAQSVYHLHIHIL 347
           Q  +DK   ++ V+       S YHLH+HIL
Sbjct: 222 QFSVDKNQLKMFVHY----LPSYYHLHVHIL 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,790,251
Number of Sequences: 5004
Number of extensions: 35204
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)