Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0673
         (421 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743...    85   2e-17
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438...    77   8e-15
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    40   8e-04
08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701     32   0.22 
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837...    27   6.1  
01_02_0111 - 11220179-11220322,11220430-11220497,11220611-112206...    27   6.1  
04_03_0594 - 17733827-17735085,17735576-17735642,17736379-177364...    27   8.1  
03_05_0495 - 24907659-24908747                                         27   8.1  
01_02_0092 + 11057604-11057717,11058998-11059531,11060036-110601...    27   8.1  

>06_03_1059 +
           27273267-27273316,27274077-27274163,27274245-27274392,
           27274615-27274732,27274798-27274859
          Length = 154

 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 43/80 (53%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
 Frame = +1

Query: 19  AQTAAPGGDTIFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIP--RKPIPQLSL 192
           A TA  GG TIF KI+ KEIP+N +YEDE+ +AF D+NPQAP HVLVIP  R  +  L  
Sbjct: 36  AATADTGGPTIFDKIIAKEIPSNVVYEDEKVLAFRDINPQAPVHVLVIPKIRDGLTGLDK 95

Query: 193 ADDTDEQLLGHLLIVARKVA 252
           A+    ++LG+LL  A+ VA
Sbjct: 96  AEPRHVEILGYLLYAAKIVA 115


>03_02_0838 +
           11641484-11642030,11643614-11643650,11643784-11643841,
           11646176-11646265,11646796-11646913,11648093-11648277,
           11648330-11648455,11648578-11648634,11648741-11648821,
           11649068-11649102,11649265-11649354,11649443-11649599,
           11649785-11649901
          Length = 565

 Score = 76.6 bits (180), Expect = 8e-15
 Identities = 33/73 (45%), Positives = 54/73 (73%), Gaps = 2/73 (2%)
 Frame = +1

Query: 40  GDTIFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIP--RKPIPQLSLADDTDEQ 213
           G  +F KI++KEIP+  +++DE+ +AF D+NPQAPTH+++IP  +  +  LS A++   +
Sbjct: 192 GSQVFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEERHVE 251

Query: 214 LLGHLLIVARKVA 252
           +LG+LL VA+ VA
Sbjct: 252 ILGYLLYVAKVVA 264


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +1

Query: 37  GGDTIFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQL 186
           G   +F +I++   PA  +YED+ C+   D  P +  H L+IP++  P L
Sbjct: 70  GQRCVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSL 119



 Score = 31.5 bits (68), Expect = 0.28
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 279 FRLVVNDGKNGAQSVYHLHIHILGGRQ 359
           F ++VN+GK   Q ++H H+H++  R+
Sbjct: 150 FNVLVNNGKVAGQVIFHTHVHLIPRRK 176


>08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701
          Length = 204

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -2

Query: 201 VISQRELWNRLPWYH----QYMSRSLWVHIIERYALFVFVNEICRDFFT*YFPKD 49
           ++  REL+  LP        YM R L +H +  Y L +    IC  FF+ + PK+
Sbjct: 123 ILKVRELYGMLPVTAYLAVSYMDRFLSLHRLPAYTLIIECTNICMCFFSGFNPKE 177


>08_02_1359 +
           26382605-26382815,26382907-26382998,26383722-26383791,
           26383895-26384013,26384580-26384676,26384781-26384860,
           26384986-26385180,26385460-26385520,26386408-26386468,
           26386900-26386993,26387085-26387157,26387158-26387270,
           26387444-26387587
          Length = 469

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 246 SCCQLGLDKTGFRLVVNDGKNGAQSVYH 329
           +CC+ G+ K G  L+  DG NG Q +YH
Sbjct: 339 ACCK-GI-KIGKILIHRDGDNGQQLIYH 364


>01_02_0111 -
           11220179-11220322,11220430-11220497,11220611-11220644,
           11220735-11220766,11220900-11220959,11221276-11221729
          Length = 263

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 124 DVNPQAPTHVLVIPR 168
           D +P+APTHV ++PR
Sbjct: 35  DTSPRAPTHVALLPR 49


>04_03_0594 -
           17733827-17735085,17735576-17735642,17736379-17736413,
           17736810-17737665
          Length = 738

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 255 QLGLDKTGFRLVVNDGKNGAQSVYHLHIHILG 350
           Q G   TGF+L  ND  NG  ++   ++ +LG
Sbjct: 30  QPGCAMTGFKLSCNDTGNGVPTLLLRNVEVLG 61


>03_05_0495 - 24907659-24908747
          Length = 362

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +1

Query: 157 VIPRKPIPQLSLADDTDEQLLGHLLIVARKVAAS*AWTRQASA*LLTMERMAPKAFTTFT 336
           ++P K +P +  AD++D+  L    I++    +S   T  ++A      R APK    F 
Sbjct: 32  LLPPKTLPAIPDADESDDLALFRRAILSSSSPSSATPTPSSAASYFFRRRPAPK--VAFL 89

Query: 337 FISSEE 354
           F+++ +
Sbjct: 90  FLTNSD 95


>01_02_0092 +
           11057604-11057717,11058998-11059531,11060036-11060101,
           11060201-11060367,11060445-11060592,11060673-11060763,
           11060850-11061199,11061284-11061388,11061490-11061789
          Length = 624

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 261 GLDKTGFRLVVNDGKNGAQSVYHLHIHILGGRQMQWPP 374
           G    G R++V  G NG++ V  LH+  L  ++   PP
Sbjct: 76  GAALVGHRMMVFGGTNGSKKVNDLHVLDLRTKEWTKPP 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,450,030
Number of Sequences: 37544
Number of extensions: 259112
Number of successful extensions: 584
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)