Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0673
(421 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36) 131 3e-31
SB_47103| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 3e-06
SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08) 39 0.002
SB_25751| Best HMM Match : HIT (HMM E-Value=2.7e-32) 31 0.51
SB_8183| Best HMM Match : rve (HMM E-Value=1.7e-10) 30 0.68
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_49821| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_52972| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_30671| Best HMM Match : rve (HMM E-Value=6.2e-32) 27 8.3
>SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)
Length = 432
Score = 131 bits (316), Expect = 3e-31
Identities = 59/73 (80%), Positives = 68/73 (93%)
Frame = +1
Query: 37 GGDTIFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQL 216
GGDTIFGKI+RKEIPA ++ED+QC+AF D+NPQAPTHVLVIP+KPI QLS+ADD+DEQL
Sbjct: 3 GGDTIFGKIIRKEIPAEILHEDDQCLAFRDINPQAPTHVLVIPKKPIRQLSMADDSDEQL 62
Query: 217 LGHLLIVARKVAA 255
LG LLIVARKVAA
Sbjct: 63 LGRLLIVARKVAA 75
Score = 29.5 bits (63), Expect = 1.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 264 LDKTGFRLVVNDGKNGAQ 317
L G+R+++NDGKNG Q
Sbjct: 79 LANDGYRIIINDGKNGGQ 96
>SB_47103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 48.0 bits (109), Expect = 3e-06
Identities = 19/34 (55%), Positives = 28/34 (82%)
Frame = +1
Query: 7 EVKLAQTAAPGGDTIFGKILRKEIPANFIYEDEQ 108
E + AQ+A PGGDTIF +I+R ++PA FI+ED++
Sbjct: 49 EEEKAQSAVPGGDTIFSRIIRGDVPATFIHEDDK 82
>SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08)
Length = 492
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/36 (58%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Frame = +1
Query: 7 EVKLAQTAAP--GGDTIFGKILRKEIPANFIYEDEQ 108
EV+ A+ AA G TIF KIL KEIPA+ IYED++
Sbjct: 51 EVEKAKEAAKTKGEPTIFDKILSKEIPADIIYEDDK 86
>SB_25751| Best HMM Match : HIT (HMM E-Value=2.7e-32)
Length = 161
Score = 30.7 bits (66), Expect = 0.51
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 273 TGFRLVVNDGKNGAQSVYHLHIHIL 347
T + + DG QSV H+H+HIL
Sbjct: 81 TSLTISIQDGPEAGQSVQHVHVHIL 105
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +1
Query: 52 FGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGHLL 231
FG I+ K P+ Y + F ++ P P HVLV P + + + D T ++ + L
Sbjct: 10 FGHIILK--PSVVFYRSNLSIGFVNIKPVLPGHVLVSPVRVVKR--FVDLTQDE-VSDLF 64
Query: 232 IVARKVA 252
I ++++A
Sbjct: 65 ISSQRIA 71
>SB_8183| Best HMM Match : rve (HMM E-Value=1.7e-10)
Length = 785
Score = 30.3 bits (65), Expect = 0.68
Identities = 20/55 (36%), Positives = 25/55 (45%)
Frame = +1
Query: 82 ANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGHLLIVARK 246
A F + DEQ AF D+ T ++IP KP Q + D LG L RK
Sbjct: 510 ARFEWNDEQQKAFEDLKRAITTAPVLIPYKPERQTLIICDGSPTGLGGALKPTRK 564
>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 133 PQAPTHVLVIPRKPIPQLSLADDTDE 210
P P + V P +PI QLSL +D D+
Sbjct: 194 PNVPDSIGVTPEEPIDQLSLYEDFDQ 219
>SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 302 KEWRPKRLPPSHSYPRRKADAV 367
+E +PK LPPSHS P + AV
Sbjct: 39 EETKPKNLPPSHSIPIEEIIAV 60
>SB_49821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 27.9 bits (59), Expect = 3.6
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +1
Query: 82 ANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLG 222
A F + DEQ AF D+ T ++IP KP Q + D LG
Sbjct: 502 ARFEWNDEQQKAFEDLKRAITTAPVLIPYKPERQTLIICDGSPTGLG 548
>SB_52972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 802
Score = 27.5 bits (58), Expect = 4.8
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +1
Query: 55 GKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLG 222
G++ K+ A F + DEQ AF D+ +A T ++IP KP Q + D LG
Sbjct: 508 GRLTPKD--ARFEWNDEQQKAFEDLK-RAITTAVLIPYKPERQTLIICDGSPTGLG 560
>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3133
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 84 KFHLRRRTMRSVQ*CEPTSSYSCIGDTKEAYSTALAG 194
+F L R +R+ PT SY C GD ++ A+ G
Sbjct: 459 RFELASRALRTGY-AYPTQSYYCDGDVLNSFQIAVTG 494
>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1958
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 61 ILRKEIPANFIYEDEQCVAFNDVN 132
I +E+P++ + E +CVAF D N
Sbjct: 158 ISARELPSDLVGESNECVAFADGN 181
>SB_30671| Best HMM Match : rve (HMM E-Value=6.2e-32)
Length = 965
Score = 26.6 bits (56), Expect = 8.3
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 82 ANFIYEDEQCVAFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLG 222
A F + DEQ AF D+ +A T ++IP KP Q + D LG
Sbjct: 356 ARFEWNDEQQKAFEDLK-RAITTAVLIPYKPERQTLIICDGGPTGLG 401
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,754,932
Number of Sequences: 59808
Number of extensions: 274710
Number of successful extensions: 567
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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