Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0671
(398 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 93 2e-18
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 90 1e-17
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 88 5e-17
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 87 1e-16
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 81 1e-14
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 79 3e-14
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 74 1e-12
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 73 2e-12
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 71 6e-12
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 64 7e-10
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 64 1e-09
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 63 2e-09
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 52 5e-06
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 50 1e-05
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 50 2e-05
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 41 0.010
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 40 0.014
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 40 0.024
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 39 0.031
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 39 0.041
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 38 0.096
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 38 0.096
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 38 0.096
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 38 0.096
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 36 0.39
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 34 1.2
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 32 3.6
UniRef50_Q9NEE0 Cluster: Putative uncharacterized protein P1105.... 32 3.6
UniRef50_Q6ZQV7 Cluster: CDNA FLJ46864 fis, clone UTERU3011579; ... 32 3.6
UniRef50_O82491 Cluster: FACT complex subunit SPT16; n=12; Magno... 32 3.6
UniRef50_UPI00005A03B5 Cluster: PREDICTED: hypothetical protein ... 32 4.8
UniRef50_A2FJR2 Cluster: Putative uncharacterized protein; n=1; ... 31 6.3
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 31 6.3
UniRef50_Q4P0R3 Cluster: Putative uncharacterized protein; n=1; ... 31 8.3
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 31 8.3
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 31 8.3
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 93.1 bits (221), Expect = 2e-18
Identities = 41/44 (93%), Positives = 42/44 (95%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPL 44
Score = 86.6 bits (205), Expect = 2e-16
Identities = 36/47 (76%), Positives = 42/47 (89%)
Frame = +1
Query: 256 PTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
PTYPAG+MDV+++ KT E FRL+YDVKGRF IHRI+ EEAKYKLCKV
Sbjct: 80 PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKV 126
Score = 58.8 bits (136), Expect = 4e-08
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = +2
Query: 152 VIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRT 253
+IFLRNRLKYAL G EV KIV QRL+KVDGKVRT
Sbjct: 45 LIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRT 78
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 90.2 bits (214), Expect = 1e-17
Identities = 39/44 (88%), Positives = 41/44 (93%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPL 44
Score = 89.0 bits (211), Expect = 3e-17
Identities = 39/46 (84%), Positives = 41/46 (89%)
Frame = +1
Query: 259 TYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
TYPAGFMDV+SI KT E FRLIYD KGRF +HRITPEEAKYKLCKV
Sbjct: 81 TYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKV 126
Score = 59.3 bits (137), Expect = 3e-08
Identities = 30/44 (68%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Frame = +2
Query: 125 PQVARVLAP-VIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRT 253
P R P +IFLRNRLKYALTG+EV KI QR IK+DGKVRT
Sbjct: 35 PHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 78
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 88.2 bits (209), Expect = 5e-17
Identities = 38/43 (88%), Positives = 40/43 (93%)
Frame = +3
Query: 24 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPL 44
Score = 74.1 bits (174), Expect = 9e-13
Identities = 33/40 (82%), Positives = 35/40 (87%)
Frame = +1
Query: 259 TYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAK 378
TYP GFMDV+SI KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 81 TYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 59.3 bits (137), Expect = 3e-08
Identities = 30/44 (68%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Frame = +2
Query: 125 PQVARVLAP-VIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRT 253
P R P +IFLRNRLKYALTG+EV KI QR IK+DGKVRT
Sbjct: 35 PHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 78
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 87.0 bits (206), Expect = 1e-16
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL 44
Score = 80.6 bits (190), Expect = 1e-14
Identities = 36/46 (78%), Positives = 39/46 (84%)
Frame = +1
Query: 259 TYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV
Sbjct: 81 TYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKV 126
Score = 50.4 bits (115), Expect = 1e-05
Identities = 26/44 (59%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Frame = +2
Query: 125 PQVARVLAP-VIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRT 253
P +R P V+ +RNRLKYALT EV+ I+ QR I+VDGKVRT
Sbjct: 35 PHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 80.6 bits (190), Expect = 1e-14
Identities = 34/44 (77%), Positives = 37/44 (84%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPL 44
Score = 50.0 bits (114), Expect = 2e-05
Identities = 26/41 (63%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +2
Query: 125 PQVARVLAP-VIFLRNRLKYALTGNEVLKIVKQRLIKVDGK 244
P R P +IFLRNRLKYALTG+EV KI Q IK+DGK
Sbjct: 35 PHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQHFIKMDGK 75
Score = 44.8 bits (101), Expect = 6e-04
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = +1
Query: 328 DVKGRFTIHRITPEEAKYKLCKV 396
D KGRF +HRITPEEAKYKL KV
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKV 98
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 79.0 bits (186), Expect = 3e-14
Identities = 32/44 (72%), Positives = 37/44 (84%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPL 44
Score = 61.7 bits (143), Expect = 5e-09
Identities = 26/45 (57%), Positives = 35/45 (77%)
Frame = +1
Query: 262 YPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+
Sbjct: 82 YPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKI 126
Score = 50.8 bits (116), Expect = 1e-05
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2
Query: 152 VIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRT 253
++ LRNRL YAL G EV IVK R IK+DGK+RT
Sbjct: 45 ILILRNRLNYALNGREVTMIVKNRTIKIDGKIRT 78
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 73.7 bits (173), Expect = 1e-12
Identities = 32/39 (82%), Positives = 33/39 (84%)
Frame = +3
Query: 36 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPL 41
Score = 61.7 bits (143), Expect = 5e-09
Identities = 28/45 (62%), Positives = 34/45 (75%)
Frame = +1
Query: 262 YPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV
Sbjct: 79 YPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKV 123
Score = 33.5 bits (73), Expect = 1.6
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 125 PQVARVLAPV-IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 250
P R P+ + +RNRLKYAL E I++Q L+ VD R
Sbjct: 32 PHKLRECLPLLVIIRNRLKYALNAREGEMILRQGLVHVDNHPR 74
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 73.3 bits (172), Expect = 2e-12
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 149
+A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP
Sbjct: 12 VAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP 54
Score = 60.1 bits (139), Expect = 2e-08
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = +1
Query: 265 PAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
P MDV+SI K E F LIY + RF +HRITPEE KYKLCK+
Sbjct: 93 PYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKM 136
Score = 58.0 bits (134), Expect = 6e-08
Identities = 29/43 (67%), Positives = 31/43 (72%)
Frame = +2
Query: 125 PQVARVLAPVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRT 253
P R P IFLRNRLKYALTG+EV KI Q IKVDGK+RT
Sbjct: 46 PHKLRECLPHIFLRNRLKYALTGDEVKKICMQWFIKVDGKIRT 88
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 71.3 bits (167), Expect = 6e-12
Identities = 29/44 (65%), Positives = 37/44 (84%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PL
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPL 44
Score = 58.8 bits (136), Expect = 4e-08
Identities = 25/45 (55%), Positives = 34/45 (75%)
Frame = +1
Query: 262 YPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
+PAG MDV+SI T E +R++YD G F +HRIT +E+ +KLCKV
Sbjct: 82 FPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKV 126
Score = 37.5 bits (83), Expect = 0.096
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +2
Query: 152 VIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 250
VI +RN+LKY+ E L I+K+ I VDGKVR
Sbjct: 45 VIVIRNKLKYSTNQRESLNILKKNEIYVDGKVR 77
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 64.5 bits (150), Expect = 7e-10
Identities = 26/45 (57%), Positives = 34/45 (75%)
Frame = +1
Query: 262 YPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V
Sbjct: 96 YPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRV 140
Score = 62.1 bits (144), Expect = 4e-09
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+
Sbjct: 15 MPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPI 58
Score = 56.0 bits (129), Expect = 3e-07
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Frame = +2
Query: 125 PQVARVLAPV-IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRT 253
P R P+ IFLR+RLKYALT E + IVK+RL+KVDGKVRT
Sbjct: 49 PHKLRECLPINIFLRDRLKYALTAKEAVAIVKRRLVKVDGKVRT 92
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 63.7 bits (148), Expect = 1e-09
Identities = 26/44 (59%), Positives = 32/44 (72%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPL 44
Score = 57.2 bits (132), Expect = 1e-07
Identities = 25/45 (55%), Positives = 33/45 (73%)
Frame = +1
Query: 262 YPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
+P G DVVSI KT E FR++Y+V +F +HRI+ EEA Y+L KV
Sbjct: 82 FPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKV 126
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 63.3 bits (147), Expect = 2e-09
Identities = 27/45 (60%), Positives = 34/45 (75%)
Frame = +1
Query: 262 YPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
YP G MDVV I KT++ FR++YD KGRF + ++ EEAKYKL KV
Sbjct: 194 YPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKV 238
Score = 54.8 bits (126), Expect = 6e-07
Identities = 21/26 (80%), Positives = 26/26 (100%)
Frame = +3
Query: 24 ARGPKKHLKRLNAPKAWMLDKLGGVY 101
ARGPKKHLKR+NAPK+WML+KLGG++
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIW 108
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 51.6 bits (118), Expect = 5e-06
Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = +3
Query: 30 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPL 152
GPK+H+KRL AP AW + K GG +APRP GPH + +PL
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPL 48
Score = 44.0 bits (99), Expect = 0.001
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = +1
Query: 256 PTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
P +P G MDVV I +T + +R++ + R + I+ EEA+ K+C++
Sbjct: 84 PKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRI 130
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 50.4 bits (115), Expect = 1e-05
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = +3
Query: 27 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
+GP+KHLKRL AP W L + + RPS GPH + + LPL
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPL 45
Score = 38.7 bits (86), Expect = 0.041
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +1
Query: 262 YPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
+PAG MDV+SI + +E + +++D GR ++ + ++ KLCK+
Sbjct: 83 HPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKI 125
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 50.0 bits (114), Expect = 2e-05
Identities = 21/45 (46%), Positives = 32/45 (71%)
Frame = +1
Query: 262 YPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
+P GFMD++ I KT E++R++ D KGR +++I EE KLCK+
Sbjct: 83 FPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKI 125
Score = 36.7 bits (81), Expect = 0.17
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 30 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
G +KHLK APK W + + +PS G H + L L
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSL 45
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 40.7 bits (91), Expect = 0.010
Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 42 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPL 152
HL+R AP W + K GGV+ RPS GPH L LPL
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPL 40
Score = 39.1 bits (87), Expect = 0.031
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 262 YPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
+P G MDV+ I T E++R++ D + + I+ EEA KL +V
Sbjct: 78 FPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRV 122
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 40.3 bits (90), Expect = 0.014
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +1
Query: 262 YPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
+P G DV++I + NE +R++ D +G+ + +I EEA K K+
Sbjct: 83 FPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKI 127
Score = 33.5 bits (73), Expect = 1.6
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 36 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPL 152
K+HL+ L P+ W + K G + +PS GPH +P+
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPI 45
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 39.5 bits (88), Expect = 0.024
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 262 YPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
+P G DV+++ NE +R++ D KGR ++++ E KLC++
Sbjct: 77 FPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRI 120
Score = 34.7 bits (76), Expect = 0.67
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
H KRL+ PK+W + + G + GPH LPL
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPL 39
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 39.1 bits (87), Expect = 0.031
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 271 GFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
G D+VSI K + +R+ DVKG I E AK +LCK+
Sbjct: 80 GVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKI 121
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 38.7 bits (86), Expect = 0.041
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +1
Query: 262 YPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
+P GFMDV+SI + ++YD KG+ I + P KL KV
Sbjct: 79 FPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKV 123
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 37.5 bits (83), Expect = 0.096
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
H+KRL P++W L + ++ +P+ G H C+PL
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPL 41
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 37.5 bits (83), Expect = 0.096
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 262 YPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
YP G MDV+ + NE +R+I D RI EA K+C++
Sbjct: 77 YPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRI 121
Score = 37.1 bits (82), Expect = 0.13
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
HL+R +P+ W +++ G ++ +PS GPH +PL
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPL 39
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 37.5 bits (83), Expect = 0.096
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 27 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
+G +HL+R AP W + + V+ +PS GPH L +P+
Sbjct: 6 KGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPI 47
Score = 37.1 bits (82), Expect = 0.13
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 262 YPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
+P G MDV+ I + +R++ D + I PEEA YKL ++
Sbjct: 85 FPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQI 129
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 37.5 bits (83), Expect = 0.096
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 262 YPAGFMDVVSIXKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKV 396
+P GFMDV+ + T E FR++ Y VK F +H I EE K ++
Sbjct: 83 FPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRI 127
Score = 34.7 bits (76), Expect = 0.67
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 21 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
MAR G ++ LK L AP+ W + + +A +P GPH + LPL
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPL 45
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 35.5 bits (78), Expect = 0.39
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 262 YPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
YP G MDVV I + R+I D T I+ E+AKYK ++
Sbjct: 77 YPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRI 121
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 33.9 bits (74), Expect = 1.2
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +1
Query: 262 YPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
+P G MD+++I N +R++ D K R ++++ A KLC++
Sbjct: 78 FPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRI 121
Score = 33.5 bits (73), Expect = 1.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
H KR++ PK+W + K + GPH + +PL
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPL 40
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 32.3 bits (70), Expect = 3.6
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = -3
Query: 156 ITGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAP 22
I G RAT GD + VSV T+R PTS+ W ++ N G P
Sbjct: 92 IPGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEP 135
>UniRef50_Q9NEE0 Cluster: Putative uncharacterized protein P1105.03;
n=2; Leishmania|Rep: Putative uncharacterized protein
P1105.03 - Leishmania major
Length = 1246
Score = 32.3 bits (70), Expect = 3.6
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 121 VPTSCASACPCDFPEESSEVCFDRKRSPENCETT 222
V SCASA P + S C D PE C T
Sbjct: 243 VSLSCASAAPMSIERDDSANCIDENEEPEPCVDT 276
>UniRef50_Q6ZQV7 Cluster: CDNA FLJ46864 fis, clone UTERU3011579;
n=1; Homo sapiens|Rep: CDNA FLJ46864 fis, clone
UTERU3011579 - Homo sapiens (Human)
Length = 211
Score = 32.3 bits (70), Expect = 3.6
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +1
Query: 64 PKHGCWTNLAVCMHRDRQPVPTSCASACPCDFPEESSEVC 183
P HGCW +L V + + P C+ C C P C
Sbjct: 44 PSHGCWLSLPVFLETRSRQEP--CSPGCNCSHPSPCYRPC 81
>UniRef50_O82491 Cluster: FACT complex subunit SPT16; n=12;
Magnoliophyta|Rep: FACT complex subunit SPT16 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1074
Score = 32.3 bits (70), Expect = 3.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 154 HRGKHSRNLWGPVDGLGAYTPPSLSNIHAL 65
H KHS +LWG D L TPP+ ++ L
Sbjct: 41 HWKKHSADLWGSADALAIATPPASDDLRYL 70
>UniRef50_UPI00005A03B5 Cluster: PREDICTED: hypothetical protein
XP_854128; n=1; Canis lupus familiaris|Rep: PREDICTED:
hypothetical protein XP_854128 - Canis familiaris
Length = 258
Score = 31.9 bits (69), Expect = 4.8
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 109 DRQPVPTSCASACPCDFPEESSEVCFDRKRSPENCETTPHKG*W 240
D P P +C+ CPC P+ + V + RS E P G W
Sbjct: 175 DSPPSPWACSRGCPCGLPDARAPV-WHTLRSRLTREVVPSHGTW 217
>UniRef50_A2FJR2 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 292
Score = 31.5 bits (68), Expect = 6.3
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = +1
Query: 82 TNLAVCMHRDRQPVPTSCASACPCDFP--EESSEVCFDRKRSPENCETTP 225
TN+ + P PT AS P DFP SSE D + P TP
Sbjct: 71 TNIPIVSVTFYTPFPTKSASPIPTDFPTTTSSSEPTTDHSKPPTKSSITP 120
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 31.5 bits (68), Expect = 6.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
HLKR+ AP+ W + + + +P G H +PL
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPL 41
>UniRef50_Q4P0R3 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 721
Score = 31.1 bits (67), Expect = 8.3
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Frame = +2
Query: 116 NRSPQVARVLAPVIF--LRNRLKYALT----GNEVLKIVKQRLIKVDGKVRTALLILLD 274
+R P+V V A ++ L N + LT G VL + QRLI++DGKVR L + D
Sbjct: 383 DRLPRVTHVDAQLVIVGLGNATTHPLTRHSIGQVVLDPLLQRLIEMDGKVRARLRAIRD 441
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 31.1 bits (67), Expect = 8.3
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 280 DVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
D++S K ++ + ++ D KGR + I+ + AK +L KV
Sbjct: 82 DIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKV 120
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 31.1 bits (67), Expect = 8.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPH 128
MA+G KKH KR+++ K G++ + S+GPH
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPH 36
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 406,050,460
Number of Sequences: 1657284
Number of extensions: 7944596
Number of successful extensions: 21253
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 20664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21242
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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