Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0671
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    85   4e-18
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    85   4e-18
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    85   4e-18
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.1  
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    25   5.7  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    24   7.6  
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo...    24   7.6  
SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce...    24   7.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   10.0 
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    24   10.0 

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 85.0 bits (201), Expect = 4e-18
 Identities = 35/46 (76%), Positives = 41/46 (89%)
 Frame = +1

Query: 259 TYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
           T+P GFMDV+S+ KT E FRL+YD+KGRFT+HRIT EEAKYKLCKV
Sbjct: 81  TFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKV 126



 Score = 80.2 bits (189), Expect = 1e-16
 Identities = 33/44 (75%), Positives = 36/44 (81%)
 Frame = +3

Query: 21  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPL 44



 Score = 58.8 bits (136), Expect = 3e-10
 Identities = 30/44 (68%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
 Frame = +2

Query: 125 PQVARVLAP-VIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRT 253
           P  AR   P ++FLRNRLKYAL G EV  I+ QRLIKVDGKVRT
Sbjct: 35  PHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRT 78


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 85.0 bits (201), Expect = 4e-18
 Identities = 35/46 (76%), Positives = 41/46 (89%)
 Frame = +1

Query: 259 TYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
           T+P GFMDV+S+ KT E FRL+YD+KGRFT+HRIT EEAKYKLCKV
Sbjct: 81  TFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKV 126



 Score = 80.2 bits (189), Expect = 1e-16
 Identities = 33/44 (75%), Positives = 36/44 (81%)
 Frame = +3

Query: 21  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPL 44



 Score = 57.2 bits (132), Expect = 9e-10
 Identities = 29/44 (65%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
 Frame = +2

Query: 125 PQVARVLAP-VIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRT 253
           P  AR   P ++FLRNRLKYAL G EV  I+ QRLI+VDGKVRT
Sbjct: 35  PHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRT 78


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 85.0 bits (201), Expect = 4e-18
 Identities = 35/46 (76%), Positives = 41/46 (89%)
 Frame = +1

Query: 259 TYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
           T+P GFMDV+S+ KT E FRL+YD+KGRFT+HRIT EEAKYKLCKV
Sbjct: 81  TFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKV 126



 Score = 80.2 bits (189), Expect = 1e-16
 Identities = 33/44 (75%), Positives = 36/44 (81%)
 Frame = +3

Query: 21  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPL 44



 Score = 58.8 bits (136), Expect = 3e-10
 Identities = 30/44 (68%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
 Frame = +2

Query: 125 PQVARVLAP-VIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRT 253
           P  AR   P ++FLRNRLKYAL G EV  I+ QRLIKVDGKVRT
Sbjct: 35  PHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRT 78


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 125 PQVARVLAPVIFLRNRLKYALTGNEVLKIVKQ---RLIKVDGKVRTALLIL 268
           P+ A+ L+P   L + ++ A  GN  LK+  Q   R++KV+ KV +  + L
Sbjct: 378 PKPAKELSPQATLNSPIQSAEAGNVELKLHPQTPDRIVKVERKVHSLNMTL 428


>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 106 RDRQPVPTSCASACPCDFPEESSEVCFDRKRSPENCETTPHK 231
           + +Q  P  C S C C   ++  E C  +  + +NC+ +  K
Sbjct: 8   KSKQGKPCDCQSKCGC---QDCKESCGCKSSAVDNCKCSSCK 46


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 229 YEALFHNFQDFVSGQSILQTIPQENHRGKHS 137
           Y+ L H+  D V G   +  +PQ N    HS
Sbjct: 106 YKCLDHSPPDSVPGDFSISLVPQRNFLYSHS 136


>SPAC17H9.07 |||signal recognition particle subunit Srp21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 134 ARVLAPVIFLRNRLKYALTGNEVLKIVKQRLI 229
           A  L  ++ + N+L Y  TGNE+    +Q ++
Sbjct: 61  AAELGRLLLIANKLSYVSTGNEIPPEPEQEVV 92


>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 138

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 101 CTETVNRSPQVARVLAPVIFLRNRL 175
           CT +  R P+ ARVL+ +  LRNR+
Sbjct: 70  CTYSQVRGPKAARVLSEI--LRNRI 92


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 118  VDGLGAYTPPSLSNIHALGAFKRFKCF 38
            +D LG++T  SLSN  A    +R +CF
Sbjct: 1465 IDALGSFTTFSLSNNLASLHAERQRCF 1491


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 4   SARGPTWREALRSI*SA*TLPKHGCWTNLAV 96
           SA GP   ++LR+I     + + G W N++V
Sbjct: 285 SALGPETMQSLRTIERKAKISRLGIWKNISV 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,659,656
Number of Sequences: 5004
Number of extensions: 32473
Number of successful extensions: 83
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)