Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0671
(398 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 87 5e-18
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 87 5e-18
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 85 1e-17
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 30 0.77
10_08_0748 - 20277623-20277736,20277956-20279425 29 1.4
03_01_0168 + 1382531-1383931,1384028-1384150 29 1.8
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 28 2.4
07_03_0828 + 21789849-21790259,21790319-21790951,21791635-21792159 28 3.1
03_06_0588 - 34924061-34924644,34924662-34925058 27 4.1
04_01_0252 - 3329712-3331061 27 5.5
03_04_0246 - 19324858-19325159,19325239-19325479,19326420-193265... 27 5.5
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 27 7.2
09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270... 26 9.5
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 26 9.5
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 87.0 bits (206), Expect = 5e-18
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL 44
Score = 71.7 bits (168), Expect = 2e-13
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +1
Query: 259 TYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV
Sbjct: 81 TYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKV 126
Score = 48.4 bits (110), Expect = 2e-06
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +2
Query: 125 PQVARVLAPVIFL-RNRLKYALTGNEVLKIVKQRLIKVDGKVRT 253
P +R P+I + RNRLKYALT EV+ I+ QR + VDGKVRT
Sbjct: 35 PHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRT 78
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 87.0 bits (206), Expect = 5e-18
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL 44
Score = 71.7 bits (168), Expect = 2e-13
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +1
Query: 259 TYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV
Sbjct: 81 TYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKV 126
Score = 48.4 bits (110), Expect = 2e-06
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +2
Query: 125 PQVARVLAPVIFL-RNRLKYALTGNEVLKIVKQRLIKVDGKVRT 253
P +R P+I + RNRLKYALT EV+ I+ QR + VDGKVRT
Sbjct: 35 PHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRT 78
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 85.4 bits (202), Expect = 1e-17
Identities = 37/47 (78%), Positives = 40/47 (85%)
Frame = +3
Query: 12 RSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
RS ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL
Sbjct: 14 RSFWARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPL 60
Score = 77.0 bits (181), Expect = 5e-15
Identities = 34/46 (73%), Positives = 38/46 (82%)
Frame = +1
Query: 259 TYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV
Sbjct: 97 TYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKV 142
Score = 50.8 bits (116), Expect = 4e-07
Identities = 27/44 (61%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +2
Query: 125 PQVARVLAPVIF-LRNRLKYALTGNEVLKIVKQRLIKVDGKVRT 253
P AR P+I LRNRLKYALT EV+ I+ QR + VDGKVRT
Sbjct: 51 PHKARECLPLILILRNRLKYALTYREVISILMQRHVMVDGKVRT 94
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 29.9 bits (64), Expect = 0.77
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = -1
Query: 206 SGLRFRSKHTSDDSSGKSQGQALAQLVGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLRA 30
+G ++RS HT+ + S S ++ V G R+RC+H A V+ P FG + ++L A
Sbjct: 22 NGRKWRS-HTALELSTSS-----SRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSA 75
Query: 29 SR 24
SR
Sbjct: 76 SR 77
>10_08_0748 - 20277623-20277736,20277956-20279425
Length = 527
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 169 IPQENHRGKHSRNLWGPVDG-LGAYTPPSLSNIHAL 65
+P H G H +LWG V G LGA+ L +H L
Sbjct: 296 VPLTRHPGFHQCDLWGDVLGLLGAHPVAPLVTLHHL 331
>03_01_0168 + 1382531-1383931,1384028-1384150
Length = 507
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 169 IPQENHRGKHSRNLWGPVDG-LGAYTPPSLSNIHAL 65
+P H G H +LWG V G LGA+ L +H L
Sbjct: 273 VPLTRHLGFHQCDLWGDVLGLLGAHPVVPLVTLHHL 308
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -2
Query: 130 LWGPVDGLGAYTPPSLSNIHALGAFKR 50
L G G+G Y PPSLSN + AFKR
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>07_03_0828 + 21789849-21790259,21790319-21790951,21791635-21792159
Length = 522
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +1
Query: 103 HRDRQPV-PTS-CASACPCDFPE 165
HRD P+ P+S C++ACPC P+
Sbjct: 404 HRDPPPLSPSSFCSTACPCRSPD 426
>03_06_0588 - 34924061-34924644,34924662-34925058
Length = 326
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 154 HRGKHSRNLWGPVDGLGAYTPPS 86
+R H+RNLWG ++G+ P S
Sbjct: 147 YRCHHARNLWGAMEGIYQLPPDS 169
>04_01_0252 - 3329712-3331061
Length = 449
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 168 FLRKITGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSAS 46
+LR I C D+ V TH+ V P S W+R AS
Sbjct: 99 WLRTIEKKLGLIQCTDQERVGFATHQLVGPASEWWDRYEAS 139
>03_04_0246 -
19324858-19325159,19325239-19325479,19326420-19326594,
19326681-19326748,19327248-19327365,19327979-19328007
Length = 310
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 62 SQSMDVGQT--WRCVCTETVNRSPQVARVLAPVIF 160
S+ MDVG T W +CTE + + ++AP++F
Sbjct: 270 SELMDVGWTTVWVRICTEWATAALYIWTLVAPLLF 304
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -2
Query: 205 QDFVSGQSILQTIPQENHRGKHSRNLWGPVDGLGAYTPPSLSNI 74
Q +SG++ IP H+RN+ PV G PPS NI
Sbjct: 310 QSRLSGETAPMIIPGGGRGPVHNRNMSDPVRGF-MLPPPSPKNI 352
>09_03_0029 +
11724581-11724583,11726413-11726610,11726874-11727038,
11727217-11727283,11727645-11727812,11728070-11728194,
11728288-11728446,11728552-11728714,11728795-11728920,
11729000-11729083,11729161-11729528,11729613-11729813,
11729909-11730018,11730113-11730197,11730360-11730488,
11730580-11730667,11730805-11730893,11730968-11731267
Length = 875
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 298 KTNELFRLIYDVKGRFTIH 354
K E+FR + D K RFT+H
Sbjct: 830 KIAEVFRAVEDAKKRFTVH 848
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 109 DRQPVPTSCASACPCDFPEESSEVCFDRKRSPENCE 216
D +P P C C C+ P+ + C K P +CE
Sbjct: 100 DCKPKPCHC---CSCEKPKPKPKPCHCEKPKPCHCE 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,273,634
Number of Sequences: 37544
Number of extensions: 226888
Number of successful extensions: 733
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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