Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0671
(398 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 2e-20
SB_11242| Best HMM Match : MAM (HMM E-Value=0) 29 1.8
SB_38102| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_52189| Best HMM Match : DUF454 (HMM E-Value=5.7) 26 9.8
SB_50552| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00012) 26 9.8
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42) 26 9.8
SB_12215| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 94.7 bits (225), Expect = 2e-20
Identities = 40/44 (90%), Positives = 42/44 (95%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL
Sbjct: 425 MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPL 468
Score = 79.8 bits (188), Expect = 8e-16
Identities = 36/46 (78%), Positives = 40/46 (86%)
Frame = +1
Query: 259 TYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
TYPAGFMDVV+I KT E FRL+YDVKGRF +HRIT EEAKYKL +V
Sbjct: 505 TYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRV 550
Score = 62.9 bits (146), Expect = 9e-11
Identities = 32/44 (72%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Frame = +2
Query: 125 PQVARVLAP-VIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRT 253
P R P +IFLRNRLKYAL G EV KIVKQRLIK+DGKVRT
Sbjct: 459 PHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQRLIKIDGKVRT 502
>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
Length = 348
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = +1
Query: 163 EES--SEVCFDRKRSPENCE 216
EES +E+C DRKR P++CE
Sbjct: 76 EESRYNELCHDRKRGPDDCE 95
>SB_38102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 223
Score = 28.3 bits (60), Expect = 2.4
Identities = 8/18 (44%), Positives = 16/18 (88%)
Frame = +3
Query: 231 RLMGKLGLPYLSCWIYGC 284
+L+G+LG+PY++ ++GC
Sbjct: 154 KLLGRLGIPYVNLELFGC 171
>SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1528
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 115 QPVPTSCASACPCDFPEESSEVCFDRKRSPENCETTPHK 231
+P+P C C+ P++ VC ++ NCE+T K
Sbjct: 1430 EPLPDWCKCGNCCEMPQQIENVCCGKR----NCESTKAK 1464
>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 240 PSTFMRRCFTIFRTSFPVKAYFRRFLRK 157
PS++ F +FRT FP + RF R+
Sbjct: 84 PSSYNGHQFLVFRTDFPFSKHKNRFKRR 111
>SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 692
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 6 GTRSNMARGPKKHLKRLNAPKAWMLDK 86
G + PKKH K PKA MLD+
Sbjct: 286 GLERSTLHSPKKHAKEAPKPKAGMLDE 312
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 26.6 bits (56), Expect = 7.4
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = +1
Query: 100 MHRDRQPVPTSCASACPCDFPEESSEVCFDRKRSPENCETTPHKG*WES*DCPT 261
+H D TS P FP R SPEN ET K W D T
Sbjct: 70 IHWDDFKCGTSSTPEYPTTFPRLEQTTPRMRANSPENRETPQTKTEWHGQDLKT 123
>SB_52189| Best HMM Match : DUF454 (HMM E-Value=5.7)
Length = 203
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 162 RKITGASTRATCGDRLTVSVHTHRQVCPTSMLWER 58
R +T + CG+R + T R+ CP+S W R
Sbjct: 122 RSLTRCARSFGCGERYQL---TQRRACPSSSRWPR 153
>SB_50552| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00012)
Length = 966
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 82 TNLAVCMHRDRQPVPTSCASACPCDFPEESSEVCFDRKRS 201
T++ MHR R S + + C+ P+ S ++CF RS
Sbjct: 719 TDVQTEMHRLRTEGKLSLSVSLICEAPQASIKICFLNARS 758
>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
Length = 1207
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 41 AFEALKRSQSMDVGQTWRCVCTETVNRSPQVAR 139
AF LK ++V + +C+ + ++PQV R
Sbjct: 566 AFAGLKGKSGLNVSEVVKCIQADNTPQTPQVKR 598
>SB_12215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 106 RDRQPVPTSCASACPCDFPEESSEVCFDRKRSPENCETTP 225
+ Q V SCAS+C C + C + SP C TP
Sbjct: 43 KKNQAVAFSCASSCACVPAMNLTINCSENPLSP-GCRVTP 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,018,223
Number of Sequences: 59808
Number of extensions: 263488
Number of successful extensions: 657
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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