Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0671
(398 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 78 3e-15
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 29 1.6
Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical p... 29 1.6
Z82280-5|CAB05266.1| 294|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z81481-4|CAB03950.1| 345|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z81069-8|CAB02996.2| 600|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z69659-5|CAL63991.1| 100|Caenorhabditis elegans Hypothetical pr... 27 5.0
AL021448-4|CAA16278.2| 600|Caenorhabditis elegans Hypothetical ... 27 5.0
Z81133-6|CAJ85766.1| 398|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr... 27 6.5
AL132948-43|CAB61061.2| 511|Caenorhabditis elegans Hypothetical... 27 6.5
AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin recep... 27 6.5
AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal daue... 27 6.5
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr... 26 8.7
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr... 26 8.7
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr... 26 8.7
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 77.8 bits (183), Expect = 3e-15
Identities = 34/42 (80%), Positives = 36/42 (85%)
Frame = +3
Query: 27 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 152
RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPL 43
Score = 72.5 bits (170), Expect = 1e-13
Identities = 29/48 (60%), Positives = 37/48 (77%)
Frame = +1
Query: 253 CPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 396
C +P GFMDVV+I +TNE FR++YD KGR+ +HRI EA +KLCKV
Sbjct: 78 CHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKV 125
Score = 51.2 bits (117), Expect = 3e-07
Identities = 26/47 (55%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = +2
Query: 116 NRSPQVARVLAPV-IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRT 253
N P R P+ +FLRNRLKYAL E KI+ QR+++VDGKVRT
Sbjct: 31 NPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRT 77
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 172 TIPQENHRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF 56
T+P N +GP+ GLG +T P+L + G F
Sbjct: 60 TVPTLNPMAPVPPPTFGPIPGLGNFTLPTLGTLPGFGNF 98
>Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical
protein Y69H2.10a protein.
Length = 572
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 172 TIPQENHRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF 56
T+P N +GP+ GLG +T P+L + G F
Sbjct: 60 TVPTLNPMAPVPPPTFGPIPGLGNFTLPTLGTLPGFGNF 98
>Z82280-5|CAB05266.1| 294|Caenorhabditis elegans Hypothetical
protein R05A10.5 protein.
Length = 294
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +1
Query: 70 HGCWTNLAVCMHRDRQPVP-----TSCASACPCDFPEESSEVC 183
+G WT C+ D+ P T ++ CPC P +++ +C
Sbjct: 140 NGQWTRTRKCLS-DKAGCPCSGDVTDASAQCPCSQPSDATSIC 181
>Z81481-4|CAB03950.1| 345|Caenorhabditis elegans Hypothetical
protein C38D9.4 protein.
Length = 345
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 137 RVLAPVIFLRNRLKYALTGNEV-LKIVKQRLIKVDGKVRTALLILLDLWMLSQL 295
R + V+ L ++ L E LK+ RL+ +D K+ T +L LD ML+ +
Sbjct: 135 RAIDDVVILTEIIRETLMPEETRLKVNTVRLVGIDMKMMTRILSYLDEKMLNAI 188
>Z81069-8|CAB02996.2| 600|Caenorhabditis elegans Hypothetical
protein Y2H9A.4 protein.
Length = 600
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -2
Query: 241 PINLYEALFHNFQDFVSGQSILQTIPQENHRGKHSRNLWGPVDGL-GAYTPPSLSNIH 71
PI L++ +F+N + ++ S P + H+ N G DG +P +S+I+
Sbjct: 172 PITLFKLIFYNQKGYIPIPSSDPENPPDGISNGHTHNFSGSTDGKHHGLSPKHISSIN 229
>Z69659-5|CAL63991.1| 100|Caenorhabditis elegans Hypothetical
protein F07C6.6 protein.
Length = 100
Score = 27.1 bits (57), Expect = 5.0
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = +2
Query: 44 FEALKRSQSMDVGQTWRCVCTETVNRSPQVARVLAPVIFLRNRLKYALTGNEVLKIVKQR 223
F+A+ S + VG C T TV+ + +IF+ + A+ G + + +
Sbjct: 3 FQAIICSFILGVGLVLICTSTGTVDEDTNFTKTTCKIIFIIGCVMTAIGGLAYVYTIHEV 62
Query: 224 LIKVDGKVRTALLILLD 274
L++ K R L L+
Sbjct: 63 LVRAREKFRAKKLRKLE 79
>AL021448-4|CAA16278.2| 600|Caenorhabditis elegans Hypothetical
protein Y2H9A.4 protein.
Length = 600
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -2
Query: 241 PINLYEALFHNFQDFVSGQSILQTIPQENHRGKHSRNLWGPVDGL-GAYTPPSLSNIH 71
PI L++ +F+N + ++ S P + H+ N G DG +P +S+I+
Sbjct: 172 PITLFKLIFYNQKGYIPIPSSDPENPPDGISNGHTHNFSGSTDGKHHGLSPKHISSIN 229
>Z81133-6|CAJ85766.1| 398|Caenorhabditis elegans Hypothetical
protein T28B8.3b protein.
Length = 398
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 232 LYEALFHNFQDFVSGQSILQTIPQENHRGKHSRNLWGPV 116
+Y + +NFQ + +LQTI Q H G +++ W P+
Sbjct: 127 IYTRMHNNFQSMTYFRVLLQTITQ--HYGSSTKS-WSPI 162
>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical protein
T28B8.3a protein.
Length = 1838
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 232 LYEALFHNFQDFVSGQSILQTIPQENHRGKHSRNLWGPV 116
+Y + +NFQ + +LQTI Q H G +++ W P+
Sbjct: 1567 IYTRMHNNFQSMTYFRVLLQTITQ--HYGSSTKS-WSPI 1602
>AL132948-43|CAB61061.2| 511|Caenorhabditis elegans Hypothetical
protein Y39B6A.41 protein.
Length = 511
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -3
Query: 264 ISRAVLTFPSTFMRRCFTIFRTSFPVKAYFRRFLRKITGASTRAT 130
+S AV + M C + P+K +FR LRK G + T
Sbjct: 13 LSHAVFSQYGEIMAACLNLMNV--PIKGFFRESLRKNYGVESEET 55
>AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin receptor
homolog protein.
Length = 1846
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 82 TNLAVCMHRDRQPVPTSCASACPCDFPEESSEVCFDRKRSPE 207
T L + H D+Q + C C EESSE ++K+ P+
Sbjct: 863 TLLTMMGHEDQQKTCAATPGCCSCSAIEESSEQ--NKKKRPD 902
>AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal dauer
formation protein 2 protein.
Length = 1843
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 82 TNLAVCMHRDRQPVPTSCASACPCDFPEESSEVCFDRKRSPE 207
T L + H D+Q + C C EESSE ++K+ P+
Sbjct: 860 TLLTMMGHEDQQKTCAATPGCCSCSAIEESSEQ--NKKKRPD 899
>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical
protein C37C3.6c protein.
Length = 1487
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 73 GCWTNLAVCMHRDRQPVPTSCASA 144
G +AVC++ D++PVP C A
Sbjct: 664 GSQDRVAVCLNYDKKPVPEWCDEA 687
>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical
protein C37C3.6a protein.
Length = 1558
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 73 GCWTNLAVCMHRDRQPVPTSCASA 144
G +AVC++ D++PVP C A
Sbjct: 664 GSQDRVAVCLNYDKKPVPEWCDEA 687
>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical
protein C37C3.6b protein.
Length = 2167
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 73 GCWTNLAVCMHRDRQPVPTSCASA 144
G +AVC++ D++PVP C A
Sbjct: 664 GSQDRVAVCLNYDKKPVPEWCDEA 687
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,397,097
Number of Sequences: 27780
Number of extensions: 192196
Number of successful extensions: 541
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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