Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0671
         (398 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   0.24 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.7  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   3.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   5.2  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.4 bits (53), Expect = 0.24
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 375 SLLRGDXVDCESALNIID*TKQFISLXN*DNIHKSSRISRAVLT 244
           SLL+ + V C+ A++++      + + + DNIH    IS   LT
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVISLNKLT 424


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 59  RSQSMDVGQTWRCVCTETVNRSPQVARVLAPVIFLRNRL--KYALTGNEV 202
           +S++ DV ++WR +  E  NR+    R++    +    L  KY  +G+ V
Sbjct: 261 QSETYDVLRSWRNLMDEHSNRTNSDPRMILTEAYTEFNLTIKYYKSGSTV 310


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = +1

Query: 238 WES*DCPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYK 384
           W S +C T     +DVV     NEL R    VK        TP    Y+
Sbjct: 67  WGS-ECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYE 114


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 30  GPKKHLKRLNAP 65
           GPK+HL+ L  P
Sbjct: 336 GPKEHLRSLGIP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,532
Number of Sequences: 438
Number of extensions: 2256
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)