Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0670
         (434 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori...    44   0.001
UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9; Obtectomera...    41   0.010
UniRef50_Q8IK08 Cluster: Putative uncharacterized protein; n=1; ...    32   6.0  
UniRef50_A6R598 Cluster: Predicted protein; n=1; Ajellomyces cap...    31   8.0  

>UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx
           mori|Rep: Reverse transcriptase - Bombyx mori (Silk
           moth)
          Length = 1076

 Score = 44.4 bits (100), Expect = 0.001
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = -1

Query: 413 PLLWKTGYDWELKGDFLLDLNTVCYSDDS 327
           PLLW  GYDW L+G  L  L  +CY+DD+
Sbjct: 664 PLLWNIGYDWVLRGALLPGLRVICYADDT 692


>UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9;
           Obtectomera|Rep: Reverse transcriptase - Papilio xuthus
          Length = 1053

 Score = 41.1 bits (92), Expect = 0.010
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -1

Query: 413 PLLWKTGYDWELKGDFLLDLNTVCYSDDS 327
           PLLW  GYDW L+G  +  ++  CY+DD+
Sbjct: 642 PLLWNVGYDWVLRGANIQGVDVTCYADDT 670


>UniRef50_Q8IK08 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 1425

 Score = 31.9 bits (69), Expect = 6.0
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +3

Query: 12   SNSSQDGFFFLKI---CIVKLFKVLKLFIHSLYDKNLNLYYVIHLKSQIDK 155
            +N  +  FFFL I   CI    K+ KL IH + +K  NL  +   ++QIDK
Sbjct: 1189 TNKRKKIFFFLFIKQECINNFLKI-KLLIHKMKEKKNNLKLISLFQNQIDK 1238


>UniRef50_A6R598 Cluster: Predicted protein; n=1; Ajellomyces
           capsulatus NAm1|Rep: Predicted protein - Ajellomyces
           capsulatus NAm1
          Length = 479

 Score = 31.5 bits (68), Expect = 8.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 434 GHACCPWPLLWKTGYDWELKGDF 366
           G  C  WP LW TG  W   G+F
Sbjct: 109 GGICGTWPALWSTGATWPEDGEF 131


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 353,972,267
Number of Sequences: 1657284
Number of extensions: 5351680
Number of successful extensions: 13198
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13197
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)