Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0670
         (434 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   2.2  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   5.1  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.7  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.7  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.7  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   6.7  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 210 WECLSIFKVIIFILI 166
           W+CL  F  ++FIL+
Sbjct: 305 WKCLLFFVSVLFILL 319


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 210 WECLSIFKVIIFILI 166
           W+CL  F  ++FIL+
Sbjct: 305 WKCLLFFVSVLFILL 319


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 210 WECLSIFKVIIFILI 166
           W+CL  F  ++FIL+
Sbjct: 305 WKCLLFFVSVLFILL 319


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 210 WECLSIFKVIIFILI 166
           W+CL  F  ++FIL+
Sbjct: 305 WKCLLFFVSVLFILL 319


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 349 VLRSRRKSPFSSQSYP 396
           +L S+ K+P SS SYP
Sbjct: 13  MLDSQEKTPLSSVSYP 28


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 205 FPMFTVYLVLSSFLFIYIY 261
           F +FTV+ +L ++ F Y +
Sbjct: 89  FIIFTVHFLLCTYYFYYAF 107


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 192 FKVIIFILIQSYLCRSVILNE*HNT 118
           F  I+F++  S +   V+LN  H T
Sbjct: 278 FNCIMFMVASSVVLTVVVLNYHHRT 302


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 192 FKVIIFILIQSYLCRSVILNE*HNT 118
           F  I+F++  S +   V+LN  H T
Sbjct: 278 FNCIMFMVASSVVLTVVVLNYHHRT 302


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 192 FKVIIFILIQSYLCRSVILNE*HNT 118
           F  I+F++  S +   V+LN  H T
Sbjct: 278 FNCIMFMVASSVVLTVVVLNYHHRT 302


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 192 FKVIIFILIQSYLCRSVILNE*HNT 118
           F  I+F++  S +   V+LN  H T
Sbjct: 278 FNCIMFMVASSVVLTVVVLNYHHRT 302


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 192 FKVIIFILIQSYLCRSVILNE*HNT 118
           F  I+F++  S +   V+LN  H T
Sbjct: 278 FNCIMFMVASSVVLTVVVLNYHHRT 302


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 85  NNFRTLNNFTIHIF 44
           N FR+ +NF++ +F
Sbjct: 65  NQFRSYSNFSVFLF 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,441
Number of Sequences: 336
Number of extensions: 1554
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9670396
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)