Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0670
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    27   1.6  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    26   2.2  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    24   8.8  
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       24   8.8  

>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 33  FFFLKICIVKLFKVLKLFIHSLYDKNLNLY 122
           FF + +C+  +F V  + IH    K LNL+
Sbjct: 431 FFIILVCLAVIFYVFNIRIHWSDFKELNLF 460


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -1

Query: 431 HACCPWPLLWKTGYDWELKGD 369
           + C  WP  W  G DW   G+
Sbjct: 217 YGCGTWPAFWTLGDDWPNGGE 237


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 398 TGYDWELKGDFLLDLNTVCYSDDS 327
           T   W+ +GDF+ ++    YS DS
Sbjct: 336 TARKWDNQGDFIRNMRKEIYSGDS 359


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 117 LYYVIHLKSQIDKDNFE 167
           L + +HL SQ+DK N E
Sbjct: 345 LLFAVHLPSQLDKQNQE 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,554,176
Number of Sequences: 5004
Number of extensions: 25166
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)