Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0670
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0209 - 1647146-1647238,1647574-1647614,1647651-1647718,164...    27   6.6  

>03_01_0209 -
           1647146-1647238,1647574-1647614,1647651-1647718,
           1647762-1647779,1647886-1648361,1648626-1648994,
           1649044-1649092,1650362-1650405,1650901-1651116
          Length = 457

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 119 VLCHSFKITDRQR*L*IRINMITLKIDKHSQCLQ 220
           V   SF+I D  R L   + M++L +  H +CLQ
Sbjct: 142 VFLESFRIGDETRWLLDHLVMVSLDLTAHRRCLQ 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,009,645
Number of Sequences: 37544
Number of extensions: 126513
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)