Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0670
         (434 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           25   0.88 
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   6.2  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    22   8.2  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    22   8.2  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    22   8.2  

>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 25.4 bits (53), Expect = 0.88
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -1

Query: 413 PLLWKTGYDWELKGDFLLDLNTVCYSDD 330
           P LW T YD  L      D   V Y+DD
Sbjct: 701 PTLWNTMYDGVLDVALPQDCEMVAYADD 728


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 413 PLLWKTGYDWELKGDFLLDLNTVCYSDD 330
           P LW   YD  L      D+  + Y+DD
Sbjct: 694 PTLWNIMYDGVLDVPLPPDVEVIGYADD 721


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
            channel alpha1 subunit protein.
          Length = 1893

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 205  FPMFTVYLVLSSFLFIYIY 261
            FP F  + VL SFL I ++
Sbjct: 1402 FPYFISFYVLCSFLIINLF 1420


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 413 PLLWKTGYDWELKGDFLLDLNTVCYSDD 330
           P LW  GYD  L+ +       V + DD
Sbjct: 638 PRLWNVGYDGVLRLELPEGAQAVGFVDD 665


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 413 PLLWKTGYDWELKGDFLLDLNTVCYSDD 330
           P LW T YD  L      D   + Y+DD
Sbjct: 634 PTLWNTMYDGVLDIALPPDAEILGYADD 661


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 379,707
Number of Sequences: 2352
Number of extensions: 5587
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 36142935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)