Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0670
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-8|CAB54342.2|  138|Caenorhabditis elegans Hypothetical ...    27   5.9  
AF016441-7|AAB65908.1|  344|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AL110478-8|CAB54342.2|  138|Caenorhabditis elegans Hypothetical
           protein Y26D4A.3 protein.
          Length = 138

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 237 R*NQIHCKHWECLSIFKVIIFILI 166
           R   I C  W C S+  ++IFI++
Sbjct: 80  RNRSISCIEWSCFSVIGLVIFIVV 103


>AF016441-7|AAB65908.1|  344|Caenorhabditis elegans Hypothetical
           protein M03F8.1 protein.
          Length = 344

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 27  DGFFFLKICIVKLFKVLKLFIHSLYDKN--LNLYYVI 131
           D F   K+C ++L  +  LF+++LYD N   NL+ V+
Sbjct: 281 DTFVSPKVCFLELACIGILFLNNLYDVNQTQNLHLVV 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,390,132
Number of Sequences: 27780
Number of extensions: 134049
Number of successful extensions: 340
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)