Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0670
         (434 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13680.1 68418.m01593 IKI3 family protein weak similarity to ...    28   2.4  
At3g48820.2 68416.m05332 glycosyl transferase family 29 protein ...    26   9.5  
At3g48820.1 68416.m05331 glycosyl transferase family 29 protein ...    26   9.5  

>At5g13680.1 68418.m01593 IKI3 family protein weak similarity to
           SP|O95163 IkappaB kinase complex-associated protein (IKK
           complex-associated protein) (p150) {Homo sapiens};
           contains Pfam profile PF04762: IKI3 family
          Length = 1319

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 395 GYDWELKGDFLLDLNTVCYSD 333
           GYD EL G +L ++  VC+ D
Sbjct: 481 GYDTELHGSYLQEVEVVCHED 501


>At3g48820.2 68416.m05332 glycosyl transferase family 29 protein /
           sialyltransferase family protein contains Pfam profile:
           PF00777 sialyltransferase (Glycosyltransferase family
           29)
          Length = 431

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 379 SSQSYPVFHSSGHGQ 423
           S+  YPV HS GHGQ
Sbjct: 410 STSMYPVEHSPGHGQ 424


>At3g48820.1 68416.m05331 glycosyl transferase family 29 protein /
           sialyltransferase family protein contains Pfam profile:
           PF00777 sialyltransferase (Glycosyltransferase family
           29)
          Length = 440

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 379 SSQSYPVFHSSGHGQ 423
           S+  YPV HS GHGQ
Sbjct: 419 STSMYPVEHSPGHGQ 433


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,662,738
Number of Sequences: 28952
Number of extensions: 114187
Number of successful extensions: 235
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)